RNA id: TU230300


Basic Information

Item Value
RNA id TU230300
length 231
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G169820
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 30140184 ~ 30140414 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGCCCCAGCACCCCTGAGATATTGGTGTCGCTGGATGCTGAGAAAGCTTTTGACAGGGTGGAGTGGGAGTTTCTTTTTGAAATGATGGATAGATTTGGTTTGGGTTCAGGTTTCATATCATGGGTAAAATTGTTATATTCCTCCCCAGTAGCATCTGTACAAACAAACAATGTGCTCTCAccctcttttcatcttcaccGCGGCACAAGACAAGGGTGTCCGCTGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230108 lncRNA upstream 834692 29305278 ~ 29305492 (+) True G169694
TU230011 lncRNA upstream 970457 29149875 ~ 29169727 (+) True G169606
TU230010 lncRNA upstream 1140494 28999459 ~ 28999690 (+) True G169605
TU229998 lncRNA upstream 1193527 28946310 ~ 28946657 (+) True G169595
TU229984 lncRNA upstream 1193992 28937571 ~ 28946192 (+) True G169581
TU230314 lncRNA downstream 62048 30202462 ~ 30204419 (+) True G169833
TU230323 lncRNA downstream 82094 30222508 ~ 30225627 (+) True G169840
TU230341 lncRNA downstream 129766 30270180 ~ 30275164 (+) True G169855
TU230440 lncRNA downstream 248967 30389381 ~ 30389631 (+) True G169929
TU230441 lncRNA downstream 270753 30411167 ~ 30418143 (+) True G169930
XM_039777481.1 mRNA upstream 26494 30011333 ~ 30113690 (+) False uvrag
XM_039777482.1 mRNA upstream 26494 30022595 ~ 30113690 (+) True uvrag
XM_039778094.1 mRNA upstream 130602 29994769 ~ 30009582 (+) True dgat2
XM_039778095.1 mRNA upstream 130602 29996562 ~ 30009582 (+) False dgat2
XM_039778097.1 mRNA upstream 151817 29972641 ~ 29988367 (+) True mogat2
XM_039777456.1 mRNA downstream 121692 30262106 ~ 30266358 (+) True si:ch211-266i6.3
XM_039777461.1 mRNA downstream 154091 30294505 ~ 30309393 (+) True LOC120543994
XM_039777664.1 mRNA downstream 251814 30392228 ~ 30407729 (+) True slc37a4b
XM_039777665.1 mRNA downstream 251993 30392407 ~ 30406657 (+) False slc37a4b
XM_039777666.1 mRNA downstream 252184 30392598 ~ 30406657 (+) False slc37a4b
TU230294 other upstream 11252 30128532 ~ 30128932 (+) True G169814
XR_005636422.1 other upstream 27973 30011334 ~ 30112211 (+) False uvrag
TU230254 other upstream 169077 29945874 ~ 29971107 (+) True G169789
unassigned_transcript_951 other upstream 2860463 27279649 ~ 27279721 (+) True trnav-aac_10
TU229197 other upstream 3175144 26962206 ~ 26965040 (+) False G169042
TU230749 other downstream 1045523 31185937 ~ 31218284 (+) True G170156
XR_005636475.1 other downstream 1339898 31480312 ~ 31509393 (+) True LOC120544216
TU230881 other downstream 1462113 31602527 ~ 31611684 (+) False micu2
TU230907 other downstream 1537584 31677998 ~ 31680066 (+) True G170284
unassigned_transcript_952 other downstream 1662417 31802831 ~ 31802912 (+) True trnas-gcu_8

Expression Profile