RNA id: XM_039777461.1


Basic Information

Item Value
RNA id XM_039777461.1
length 4572
RNA type mRNA
GC content 0.46
exon number 20
gene id LOC120543994
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 30294505 ~ 30309393 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCTACAAGCAGGCAGGGCCATGGGAAACACATTGCGCAAGCTCCGACTTCTAAGGAACATGGGAAGTGTAGTCCTTATTGGAGGATGAAGGGAGATGACGGACGCTCTGCACAGGGGCACACCCACGAGGCGGCGTTGTTCATGGCAGCAGCATCATGCGTTCATCTGGGCTCTAAAAGCGGCTGTAAACTCGACTCGACCGGTGCCTGTGTGTATCACAGGGGGAGATCACACATCCTATCGATGGTTGTCTGGAGGATAAGAAATGCGCACAAAAGGAAATATGCACTCATATGCCTGTGCATTGTCGGCTTCATCATGTACAGATATCTTGGCATGCCAGCAGGGGGACGGAGAATGAGCAGGAAGGTGGGTCTGAGTGCCAACTCGTCCCAGTTCACCCTGGGGGGGGAGCCCTTCCGCATCCTCGGGGGGTCCGTCCACTATTTCCGTGTACCCAGGGCCTACTGGAGGGACCGCCTGATGAAAATGAAGGCCTGCGGCATCAACACCCTCACTACGTACGTGCCGTGGAGTCTGCACGAGCCAGAGAGAGGGGTTTTCAACTtccacacacagctggatttaATAGCCTATATCAATCTTGCTGCTGAATTGGGATTGTGGGTGATTTTACGCCCAGGCCCATACATTTCCTCTGAGCTGGACCTAGGAGGACTGCCAAGCTGGCTCCTCCGTGATGGCAGCATGAGACTGAGGACGACTCACCCAGGCTTTGCTCAGGCCGTCAAtgctttttttgacaaacttaTACCAAAAGTGGTTCCACTGCAGTTCAAGAAAGGAGGTCCCATTATTGCAGTGCAGGTGGAAAACGAGTATGGATCCTTTGCAAAGGATGACAGTTACATGCTGTTTATTAAAGAGGCCTTAGAGTCCAGAGGGATCAGCGAGCTCTTGCTCACGTCAGACAACCACAACACAGTAAAGTCGGGGGGTGTGGACGGAGCCATCAGATCATTGAAGCTGCAGAAGCTTAATCAGAGAGACATCCAGGATCTGAATGCTATCCAGCCCAACAGCCCCATCCTGGTGATGGACTACTGGACTGGATGGTATGATGTGTGGGGTGACCTCCACCATGTGCTTCCCCCAGAGGATATGGTGTCCACCGTGAGAGAAATCCTGAGGCGAGGCATGTCTGTTAACCTCTACATGTTCCACGGAGGCTCCAGTTTTGGCTGTTCGGGGCGGgtggcagcagaTGATAGTTAATCTGTTACACTATGATGATTTTCAGATTATGACGCTCCCTTGTCTGAAGCTGGGGAGTACACTCCAAAGTACCACCTCCTTAGGGATTTGCTTTCTCGATACAACAGTGGAAACGGTTTCCCTGACATGCCAGCCCTGCATTACAGGGAGGCTTATGAACCAGCTATCATGTACCAGCATCTGTCGTTATGGGATGCTTTGAGCTTCACTGAGGGGCCAATTAAGTCACTAAAGCCATTAAGCATGGAGAATCTGCCTGTGAACAACAGGAATGGCCAGTCCTATGGATACACGCTGTATGAGACTACCATCACCAGTGGAGGATCATTGAAGTCGGGAGACAGTGTCCGAGACCGCGCCCTAGTGTTTGTCGACAGAAGCTACATTGGTCTTTTCAAGCGCCAAAGCCTGGAGCTGGCGGTTCCAGATGGTAAGGGACAGCGTACCTTAAGTTTATTGGTGGAAAACTGTGGACGAGTTCACCATGGAAGGGACCTTGACAAACAGCATAAAGGCCTCGTGGGAGACATTTTATTAAACAATATCCCCTTGCGGGATTTTATAATCTACAGCCTGGATATGAAACCCAGCTTTATTGATAGTCTTTATCAGGCACCTTGGAAAACTCTCCCTGAAACTCCGAGCTTCCCTGGATTTTTCATGGGGAGGATGTTTGCATACGGGTATCCGAGTGACACATTTATGAGGCTGCCAGGCTGGGAGAAAGGTGTTGTGTTTATCAATGGGCTGAATCTGGGCCGCTACTGGTCAATTGGTCCCCAGCAGGCTCTCTATCTCCCCGGCCCCTTTCTCAATAGTGGACATAATCAGGTCATTGTGTTTGAAGAGCAGGAGGGTGACTACAAGGTCCAATTTGAGGACACTCATGATCTTGGCATGGCAGCAGACATCCAGTGACTGTCATCACCTCTACTGACATAGATTTACAAAGCGCTTGTAACATCAGGTCAAAACTTCAAATTCAGGGATAGCAATATTGTTAATATCATGGTCATTGTATGATATAATACCTTAAAATcttcatacatacacacagaccaaTATGAAAAACAAAGACAGGCATGTTTGTATGGGAGCAGTTTATAgctatatacatacagtaccttTAGTTACAGTGACTCTTTACACATAGAGCGCAATTACCAAGTATATTCTCTTCCCCATAGATTTTCTCTTGAGATCCTGCTTGGGGATGGCAGTTATAGTTGATATTGTTGTTAGATTTGTATTGCTTGTGTGAATATTCTGCATAATGCAGTTATTGAAATGGACACGTAAAACAAAAACCAGGCTTATGGGACAATCTGATCTTAGGCAGGAGTGTTTCACATGAAACACAAGCAGCATTGTAGCAAATTCAGACCATTATCTTTGAGTGAAAGTGCAAGGTTTCAGATGCCTGACACGTCGATAACTGAGAAAATTCCTAACAGCAACAGACTCTGGGAACATTAGCATTTGTAAGCAGTGCCACTGCAAGTCAATGGGGTATGAAATCATCACTTGCAAGCCAGCCATCCATGGTGGAAATAATTAGGTTGTGTAATACAGCATACAGCACATATGAAAGGATGCACATCCAATTTTTTGAGAATTGGCTTCATATCCCATTTACTCGCACATGCATAGCTCACGACTAACAAGTGAACGGTACCACCAGCTACTCTGAAACAATAAATAACTCTGCGTAGAAACCTTCCGTTCACTCAGTGGGATCTTAATTAGCTTACAAAGATGTCTGTGAAGTAGACAGGGCCCTAGGGATACTGAATCTTCTCTTAAATGTGAGTAGACCTCAGTAGTGTTACAGCATAACAGGAATAAACGAGCTTGGAGTAAATGACTGTAAGAGAGGACATTGctgttaaaatgtaataaatcattgctccgtgttttttttttgagtgcatgtgtgtccgTGTGCTCACCATGTGCAGTGTGACAGCTGAGAATGTGTGTAAAGGAGTTACAAGACCTCCAAATTAATGCTGGGTCCGGGGGGCTATCTAAATAGCTCAGTGTTGTACAGTACAAGTGGGGAGGGCTCAGATCCCCTCAGTGCAGTCTGTCAGTCAGTGCTGACTCACGTAAGACAAGGGCCCCTTTTATTCCTCTGTGCAGCCCTGTGCCGGACAGCACTTTCAGAACAAAAGGGCCCTATTTAATGCTGATTGGATGGTTGGCTGGCTGGTGTTGTCTGCGCTCAGAGGGCTCTTTATTGCGTGCAGTGCCATCTCTTCCTGCAGTTTAAATCGCGTATCATCCTTTGTCTCAGCCCTCCGAGGAGACCTCAGTGGGCAAGCTCCTTTTGGCAACTCTCACCAGTGTCTCGCATTAGCCAGTGCTCTGAGCAGAACGGGGCGGCTGGCTTTTGTGCAGTTGTGCTTTGATACTCTGTAGTCCGTTCAAGCACATGGCTTGTGCTGCCTCCTGGGGTGGACAGGTGTGCCTCCATTTCAAAGCGGTGGTGAAGTGCACCCTACTGTGCTGTGATAATATTTCTGACCCTGGCTGTTGCTAATTAAGGAGCTCTGAGGTTGGTTTGAATCCAGGTAGAATCCAAATGGAGAAATGCCCCTAAAAAGGACAGACAACAAGGAAACAAGACCCATGTTAGAAGCAGCGCTTTTATGAGTCTACAGCCACGCTGTTGTGCCTTAGTGCAGCCTCTgtgagctaaaagctaacttcAGCacgctcacaatgacaatgctaacatgctaatgctAAGTAGGCATATTGTTTACCATGCTCATCATCTTAGTTTATTAGCACATTTGCATGCAACATATGCTAGTTAGCACTAACCAAGTAAACTGAGGCTATTTGGAATataattagttttgcaggtatttggtcacaaaccaaagtattggacaaattcaaATTTTGACGTGATGATGGCTATGATTTTGACTAAGGGAAAAATACGAAGATCACCATAGTCATAAGATGTattctctggggaccatgaacaTCTGCACAAAATATTCTGTTTACATCTGTATATATTTAATACCCTCATTATGCATATACATTTACTACATTCCTGTTTACACTATATTCATCGCATCTACTGTCTACTTTATAATACTTTATTCTTtatattattatgttatattttcagttttttaactTGCACTACCTTGTGTTAGATACTCATATTGTTGTTACTTGTGtgattttccttttctttctgatACATGTTTTATTAGTATTGTTGGAGGGTGCCTGGTGCCTACAATATTCTTGTCAATGACTTCCTGTTATTGTTGTGTACATGATAAATAAAGACCTTGAACCATGAAATGAAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004565 beta-galactosidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230341 lncRNA upstream 19341 30270180 ~ 30275164 (+) True G169855
TU230323 lncRNA upstream 68878 30222508 ~ 30225627 (+) True G169840
TU230314 lncRNA upstream 90086 30202462 ~ 30204419 (+) True G169833
TU230300 lncRNA upstream 154091 30140184 ~ 30140414 (+) True G169820
TU230108 lncRNA upstream 989013 29305278 ~ 29305492 (+) True G169694
TU230440 lncRNA downstream 79988 30389381 ~ 30389631 (+) True G169929
TU230441 lncRNA downstream 101774 30411167 ~ 30418143 (+) True G169930
TU230442 lncRNA downstream 102815 30412208 ~ 30414656 (+) False G169930
TU230456 lncRNA downstream 119345 30428738 ~ 30429029 (+) False LOC120544704
XR_005636541.1 lncRNA downstream 119605 30428998 ~ 30431487 (+) True LOC120544704
XM_039777456.1 mRNA upstream 28147 30262106 ~ 30266358 (+) True si:ch211-266i6.3
XM_039777481.1 mRNA upstream 180815 30011333 ~ 30113690 (+) False uvrag
XM_039777482.1 mRNA upstream 180815 30022595 ~ 30113690 (+) True uvrag
XM_039778094.1 mRNA upstream 284923 29994769 ~ 30009582 (+) True dgat2
XM_039778095.1 mRNA upstream 284923 29996562 ~ 30009582 (+) False dgat2
XM_039777664.1 mRNA downstream 82835 30392228 ~ 30407729 (+) True slc37a4b
XM_039777665.1 mRNA downstream 83014 30392407 ~ 30406657 (+) False slc37a4b
XM_039777666.1 mRNA downstream 83205 30392598 ~ 30406657 (+) False slc37a4b
XM_039778646.1 mRNA downstream 122395 30431788 ~ 30457805 (+) True igsf5a
XM_039778647.1 mRNA downstream 132913 30442306 ~ 30457805 (+) False igsf5a
TU230294 other upstream 165573 30128532 ~ 30128932 (+) True G169814
XR_005636422.1 other upstream 182294 30011334 ~ 30112211 (+) False uvrag
TU230254 other upstream 323398 29945874 ~ 29971107 (+) True G169789
unassigned_transcript_951 other upstream 3014784 27279649 ~ 27279721 (+) True trnav-aac_10
TU229198 other upstream 3329465 26963741 ~ 26965040 (+) True G169042
TU230749 other downstream 876544 31185937 ~ 31218284 (+) True G170156
XR_005636475.1 other downstream 1170919 31480312 ~ 31509393 (+) True LOC120544216
TU230881 other downstream 1293134 31602527 ~ 31611684 (+) False micu2
TU230907 other downstream 1368605 31677998 ~ 31680066 (+) True G170284
unassigned_transcript_952 other downstream 1493438 31802831 ~ 31802912 (+) True trnas-gcu_8

Expression Profile