RNA id: TU230442


Basic Information

Item Value
RNA id TU230442
length 346
lncRNA type inter_gene
GC content 0.49
exon number 6
gene id G169930
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 30411167 ~ 30418143 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGACGTTATTCTGCTGCCTCATCTTTTTCTTCAGCTGCGTCTGTAGCCGGTGCCTCTTCCTCGGCTTTGGCTTCGCCATTCTCAGCGGGGGCCTCTGGTGCTTTCTCCTCAGGCTTGGCCTTCTCCACCTCCTTTGCTTTCTTAGGCTTAGCAGGTGCCTTCTTTGGCTTAGGTTTGGCCTCTGCCTTTGCAGTTGCAGGTCTATCGCTTAACCTTACAGATCTCCTCTtgggCGCTGATTCTTCTCCtgaTTTGCTCCTTTTAGGCATGGTTGGTTTgtgtaaaacaaaacagagctaaacGTTACTCGATACAAgaggaaatacagtatattctgGATAAAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230440 lncRNA upstream 22577 30389381 ~ 30389631 (+) True G169929
TU230341 lncRNA upstream 137044 30270180 ~ 30275164 (+) True G169855
TU230323 lncRNA upstream 186581 30222508 ~ 30225627 (+) True G169840
TU230314 lncRNA upstream 207789 30202462 ~ 30204419 (+) True G169833
TU230300 lncRNA upstream 271794 30140184 ~ 30140414 (+) True G169820
TU230456 lncRNA downstream 14082 30428738 ~ 30429029 (+) False LOC120544704
XR_005636541.1 lncRNA downstream 14342 30428998 ~ 30431487 (+) True LOC120544704
TU230458 lncRNA downstream 14689 30429345 ~ 30429770 (+) False LOC120544704
TU230485 lncRNA downstream 59822 30474478 ~ 30502597 (+) False pcp4a
TU230486 lncRNA downstream 59822 30474478 ~ 30502597 (+) False pcp4a
XM_039777664.1 mRNA upstream 4479 30392228 ~ 30407729 (+) True slc37a4b
XM_039777665.1 mRNA upstream 5551 30392407 ~ 30406657 (+) False slc37a4b
XM_039777666.1 mRNA upstream 5551 30392598 ~ 30406657 (+) False slc37a4b
XM_039777461.1 mRNA upstream 102815 30294505 ~ 30309393 (+) True LOC120543994
XM_039777456.1 mRNA upstream 145850 30262106 ~ 30266358 (+) True si:ch211-266i6.3
XM_039778646.1 mRNA downstream 17132 30431788 ~ 30457805 (+) True igsf5a
XM_039778647.1 mRNA downstream 27650 30442306 ~ 30457805 (+) False igsf5a
XM_039778667.1 mRNA downstream 59795 30474451 ~ 30502597 (+) True pcp4a
XM_039778668.1 mRNA downstream 59819 30474475 ~ 30502597 (+) False pcp4a
XM_039777547.1 mRNA downstream 509077 30923733 ~ 30963585 (+) False gdpd5a
TU230294 other upstream 283276 30128532 ~ 30128932 (+) True G169814
XR_005636422.1 other upstream 299997 30011334 ~ 30112211 (+) False uvrag
TU230254 other upstream 441101 29945874 ~ 29971107 (+) True G169789
unassigned_transcript_951 other upstream 3132487 27279649 ~ 27279721 (+) True trnav-aac_10
TU229198 other upstream 3447168 26963741 ~ 26965040 (+) True G169042
TU230749 other downstream 771281 31185937 ~ 31218284 (+) True G170156
XR_005636475.1 other downstream 1065656 31480312 ~ 31509393 (+) True LOC120544216
TU230881 other downstream 1187871 31602527 ~ 31611684 (+) False micu2
TU230907 other downstream 1263342 31677998 ~ 31680066 (+) True G170284
unassigned_transcript_952 other downstream 1388175 31802831 ~ 31802912 (+) True trnas-gcu_8

Expression Profile