RNA id: TU232403


Basic Information

Item Value
RNA id TU232403
length 643
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G171479
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 37545360 ~ 37554128 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTGTGTCCCTGGCTaaggtgttatttgacttttcaactactctcactacttaaacttatttttacggttttaagctattcatccagtttagctttagcaattcagctattcatgttttattttgcaaacacacacatgcacgcacgcaaacacacacacacatatacacacacacagacacacaaacagacacataaacacacacacacacacacacacacacacaaacacacacacacaaagacagacacacatgcaaacacacacacaaacacacacacacaacacacacacactactcaaaaacacacacacacacacacacacacacacgccggctcgtcgtacacacaccacactcttctctcttctcatctcttctcttctgctctcctttcttctctctttctctccctctctctttcctctctttcttcttgttcagccccattcttttcacctaatatatttcacatctcatctcagctagattgatgctttttcgttctatgcagtatatatctgataataatgaaaatatttcttctgctctcagtgtctgaagtgctggcgtgtactacaggagacatattaagagcaggtgctatcgttatcagatcaaagagatgtttataaacattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232398 lncRNA upstream 12030 37532472 ~ 37533330 (+) True G171474
TU232368 lncRNA upstream 25656 37517878 ~ 37519704 (+) True G171464
TU232347 lncRNA upstream 177151 37321163 ~ 37368209 (+) True G171446
TU232313 lncRNA upstream 237044 37299003 ~ 37308316 (+) True G171428
TU232294 lncRNA upstream 269694 37275334 ~ 37275666 (+) True G171416
TU232391 lncRNA downstream 6844 37560972 ~ 37613796 (+) False G171468
TU232419 lncRNA downstream 17470 37571598 ~ 37572576 (+) True G171485
TU232425 lncRNA downstream 29839 37583967 ~ 37648576 (+) True G171490
TU232408 lncRNA downstream 39642 37593770 ~ 37606700 (+) False G171482
TU232415 lncRNA downstream 39642 37593770 ~ 37608579 (+) False G171482
XM_039826379.1 mRNA upstream 321951 37187809 ~ 37223409 (+) True LOC120575584
XM_039776763.1 mRNA upstream 1138970 36404414 ~ 36406390 (+) True LOC120543623
XM_039826475.1 mRNA upstream 1219722 36316843 ~ 36325638 (+) True LOC120575649
XM_039826485.1 mRNA upstream 1573567 35968403 ~ 35971793 (+) True LOC120575655
XM_039776757.1 mRNA upstream 1767735 35775979 ~ 35777625 (+) True LOC120543618
XM_039776717.1 mRNA downstream 124473 37678601 ~ 37695632 (+) False LOC120543587
XM_039776716.1 mRNA downstream 127803 37681931 ~ 37695632 (+) False LOC120543587
XM_039776715.1 mRNA downstream 134984 37689112 ~ 37695632 (+) True LOC120543587
XM_039776718.1 mRNA downstream 134984 37689112 ~ 37695632 (+) False LOC120543587
XM_039776649.1 mRNA downstream 142888 37697016 ~ 37697394 (+) True LOC120543545
TU232287 other upstream 283024 37261916 ~ 37262336 (+) True G171409
unassigned_transcript_962 other upstream 1920748 35624541 ~ 35624612 (+) True trnaw-cca_23
unassigned_transcript_961 other upstream 1921694 35623595 ~ 35623666 (+) True trnaw-cca_22
unassigned_transcript_960 other upstream 1923586 35621703 ~ 35621774 (+) True trnaw-cca_21
unassigned_transcript_959 other upstream 1924535 35620754 ~ 35620825 (+) True trnaw-cca_20
TU232416 other downstream 51902 37606030 ~ 37616661 (+) True G171483
TU232382 other downstream 113093 37667221 ~ 37669599 (+) False G171468
TU232573 other downstream 150555 37704683 ~ 37705579 (+) False G171572

Expression Profile