RNA id: TU232425


Basic Information

Item Value
RNA id TU232425
length 490
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G171490
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 37583967 ~ 37648576 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagagagagggggagggagagacagggagagaaaaagagagagaaagagaaggaaagagagagggagaaggagagagagatggagagagagagaaagagagggacagggagagagagcgggaaagagagagagagggagagaaaaagagagagaaagagaaggaaagagagagggagaaggagagagagatggaaagagagagagggatagagagaagggggatagagagggagagagaggcagagggaaagaaagagagagagggggagggagagacagggagggatggagagagaaggagagagagagaaagagagggacagggagagagagaaagagggagagagggaaagagagagaggtggagagagagggggatgagagagagagggagagacaaagagagagagggaaagagagggatatagagagaaagagagagagggagagagaggcagagggaaagagaggaggagagagagagggaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232419 lncRNA upstream 11391 37571598 ~ 37572576 (+) True G171485
TU232403 lncRNA upstream 29839 37545360 ~ 37554128 (+) True G171479
TU232398 lncRNA upstream 50637 37532472 ~ 37533330 (+) True G171474
TU232368 lncRNA upstream 64263 37517878 ~ 37519704 (+) True G171464
TU232347 lncRNA upstream 215758 37321163 ~ 37368209 (+) True G171446
TU232552 lncRNA downstream 22677 37671253 ~ 37671518 (+) True G171558
XR_005636511.1 lncRNA downstream 47091 37695667 ~ 37696001 (+) True LOC120544520
XR_005636361.1 lncRNA downstream 49085 37697661 ~ 37698412 (+) True LOC120543547
XR_005636362.1 lncRNA downstream 49832 37698408 ~ 37699562 (+) True LOC120543548
TU232570 lncRNA downstream 57284 37705860 ~ 37707478 (+) True G171572
XM_039826379.1 mRNA upstream 360558 37187809 ~ 37223409 (+) True LOC120575584
XM_039776763.1 mRNA upstream 1177577 36404414 ~ 36406390 (+) True LOC120543623
XM_039826475.1 mRNA upstream 1258329 36316843 ~ 36325638 (+) True LOC120575649
XM_039826485.1 mRNA upstream 1612174 35968403 ~ 35971793 (+) True LOC120575655
XM_039776757.1 mRNA upstream 1806342 35775979 ~ 35777625 (+) True LOC120543618
XM_039776717.1 mRNA downstream 30025 37678601 ~ 37695632 (+) False LOC120543587
XM_039776716.1 mRNA downstream 33355 37681931 ~ 37695632 (+) False LOC120543587
XM_039776715.1 mRNA downstream 40536 37689112 ~ 37695632 (+) True LOC120543587
XM_039776718.1 mRNA downstream 40536 37689112 ~ 37695632 (+) False LOC120543587
XM_039776649.1 mRNA downstream 48440 37697016 ~ 37697394 (+) True LOC120543545
TU232287 other upstream 321631 37261916 ~ 37262336 (+) True G171409
unassigned_transcript_962 other upstream 1959355 35624541 ~ 35624612 (+) True trnaw-cca_23
unassigned_transcript_961 other upstream 1960301 35623595 ~ 35623666 (+) True trnaw-cca_22
unassigned_transcript_960 other upstream 1962193 35621703 ~ 35621774 (+) True trnaw-cca_21
unassigned_transcript_959 other upstream 1963142 35620754 ~ 35620825 (+) True trnaw-cca_20
TU232382 other downstream 18645 37667221 ~ 37669599 (+) False G171468
TU232573 other downstream 56107 37704683 ~ 37705579 (+) False G171572

Expression Profile