RNA id: XM_039776715.1


Basic Information

Item Value
RNA id XM_039776715.1
length 1120
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC120543587
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 37678601 ~ 37695632 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGCACTGCATTTAAGAAAGAGTCATTGTGTCAGAATGTCTGCTGGAAACCAGTCAAAGTTTAAACTGTTCCCTCAGAGACATGAAACTTCACTCTCAGCAACAAGATCTCTTTAGAACGACTTCATCGTTTTACAACACTGATATGACACAGAGagaagcagccaatcagaggaccAGCTGCTGATATTTGTCTTATTTTCCAGGAGAAATGATGTGAGGGATGAATGAGTGATGATGTGCTGATGAATGATTGGACTGCTGctctcagtgtttcctctccaGATGAAGATGTGGACTCTGCTATGAGTCAgtgtgaggacagagaggagggagtcCCTCCCTCTAAAACCACTCTGTGGGGGGAACATGACAGCCAGACCAAAGCTCAGAGcCCAGAGAAGCAGCAcagacctggacctggaccaagctgtgtgtccttcaagAGTGACCGGTCAAAGAATgatggtgctaattttaaaCGACAAGACAAAATGATCCATCAGAGACCAGAATGTCTTGAagctgaacccagctgtgtgtccatgaagagtgacGAGTCTATGGGTGAACCTCTAGTCTTCAAAGATGGATGCCACTGTGTTTATCAAAGGAGGAATCTGGAAGAActtgaacccagctgtgtgtccatgaagagtgacAGGTCTATGGGACTTCCTTTAGAGTTCAAAGATGGAAGCCACTCTGTTGATCAAAAGATCCACCAGAGACCAGACTGTCCTGAagctgaacccagctgtgtgtccatgaagagtgacGAGTCTATGGGTGAACCTCTAGTCTTCAAAGATGGACGCCACTCTGATGATCAAAGGTGAGGATTTCAAACTGAAAATCAGCAGGACTAGTAAAGGTTTACCACTACAGGCAGTCCTCTGATTCACTGTTAACATCCAATTATCACCTCATGGACCTTtaccttgtgtttgtctctgtgggGACGACATAATGTGAGCTAATTCTTGTGTGgagtggaccaggagagctcagaggttcccagtctgcccagcagcatcaaacacacctagactccatatttatgctgctggaggaggacatctgcacttttgtgaagaatgagctgaagaagatccagaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232552 lncRNA upstream 17594 37671253 ~ 37671518 (+) True G171558
TU232386 lncRNA upstream 19513 37596581 ~ 37669599 (+) False G171468
TU232384 lncRNA upstream 75316 37596581 ~ 37613796 (+) False G171468
TU232383 lncRNA upstream 75316 37611964 ~ 37613796 (+) False G171468
TU232414 lncRNA upstream 82412 37594407 ~ 37606700 (+) False G171482
XR_005636511.1 lncRNA downstream 35 37695667 ~ 37696001 (+) True LOC120544520
XR_005636361.1 lncRNA downstream 2029 37697661 ~ 37698412 (+) True LOC120543547
XR_005636362.1 lncRNA downstream 2776 37698408 ~ 37699562 (+) True LOC120543548
TU232570 lncRNA downstream 10228 37705860 ~ 37707478 (+) True G171572
TU232572 lncRNA downstream 10933 37706565 ~ 37707766 (+) False G171572
XM_039826379.1 mRNA upstream 465703 37187809 ~ 37223409 (+) True LOC120575584
XM_039776763.1 mRNA upstream 1282722 36404414 ~ 36406390 (+) True LOC120543623
XM_039826475.1 mRNA upstream 1363474 36316843 ~ 36325638 (+) True LOC120575649
XM_039826485.1 mRNA upstream 1717319 35968403 ~ 35971793 (+) True LOC120575655
XM_039776757.1 mRNA upstream 1911487 35775979 ~ 35777625 (+) True LOC120543618
XM_039776649.1 mRNA downstream 1384 37697016 ~ 37697394 (+) True LOC120543545
XM_039776765.1 mRNA downstream 18162 37713794 ~ 37715491 (+) True LOC120543626
TU232382 other upstream 19513 37667221 ~ 37669599 (+) False G171468
TU232416 other upstream 72451 37606030 ~ 37616661 (+) True G171483
TU232385 other upstream 75316 37543600 ~ 37613796 (+) False G171468
TU232389 other upstream 87308 37543600 ~ 37601804 (+) True G171468
TU232287 other upstream 426776 37261916 ~ 37262336 (+) True G171409
TU232573 other downstream 9051 37704683 ~ 37705579 (+) False G171572

Expression Profile