RNA id: TU232386


Basic Information

Item Value
RNA id TU232386
length 339
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G171468
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 37543600 ~ 37669599 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttctctctcttttctctctccatccctccttctccctctctctctatctctctgtttctcttttctttctctctctctccccctgtttctctctcttttctctctccatccctccttctccctctctctctgccctctctccatccctccctctctctctctgtctctctctttctctctctctcctttctccatcccgccttctccctccctctctatctctctgtttctcttttctttctctctctccctgtttctttctcttttctctctctctgtcctctctccatccctccttctccctccctctctctgttctctctccatccctccttctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232411 lncRNA upstream 1341 37551704 ~ 37595240 (+) False G171482
TU232419 lncRNA upstream 24005 37571598 ~ 37572576 (+) True G171485
TU232403 lncRNA upstream 42453 37545360 ~ 37554128 (+) True G171479
TU232398 lncRNA upstream 63251 37532472 ~ 37533330 (+) True G171474
TU232368 lncRNA upstream 76877 37517878 ~ 37519704 (+) True G171464
TU232552 lncRNA downstream 1654 37671253 ~ 37671518 (+) True G171558
XR_005636511.1 lncRNA downstream 26068 37695667 ~ 37696001 (+) True LOC120544520
XR_005636361.1 lncRNA downstream 28062 37697661 ~ 37698412 (+) True LOC120543547
XR_005636362.1 lncRNA downstream 28809 37698408 ~ 37699562 (+) True LOC120543548
TU232570 lncRNA downstream 36261 37705860 ~ 37707478 (+) True G171572
XM_039826379.1 mRNA upstream 373172 37187809 ~ 37223409 (+) True LOC120575584
XM_039776763.1 mRNA upstream 1190191 36404414 ~ 36406390 (+) True LOC120543623
XM_039826475.1 mRNA upstream 1270943 36316843 ~ 36325638 (+) True LOC120575649
XM_039826485.1 mRNA upstream 1624788 35968403 ~ 35971793 (+) True LOC120575655
XM_039776757.1 mRNA upstream 1818956 35775979 ~ 35777625 (+) True LOC120543618
XM_039776717.1 mRNA downstream 9002 37678601 ~ 37695632 (+) False LOC120543587
XM_039776716.1 mRNA downstream 12332 37681931 ~ 37695632 (+) False LOC120543587
XM_039776715.1 mRNA downstream 19513 37689112 ~ 37695632 (+) True LOC120543587
XM_039776718.1 mRNA downstream 19513 37689112 ~ 37695632 (+) False LOC120543587
XM_039776649.1 mRNA downstream 27417 37697016 ~ 37697394 (+) True LOC120543545
TU232287 other upstream 334245 37261916 ~ 37262336 (+) True G171409
unassigned_transcript_962 other upstream 1971969 35624541 ~ 35624612 (+) True trnaw-cca_23
unassigned_transcript_961 other upstream 1972915 35623595 ~ 35623666 (+) True trnaw-cca_22
unassigned_transcript_960 other upstream 1974807 35621703 ~ 35621774 (+) True trnaw-cca_21
unassigned_transcript_959 other upstream 1975756 35620754 ~ 35620825 (+) True trnaw-cca_20
TU232573 other downstream 35084 37704683 ~ 37705579 (+) False G171572

Expression Profile