RNA id: unassigned_transcript_959


Basic Information

Item Value
RNA id unassigned_transcript_959
length 72
RNA type tRNA
GC content 0.54
exon number 1
gene id trnaw-cca_20
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 35620754 ~ 35620825 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACTCTGTGGCGCAAAGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCAGGGtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231925 lncRNA upstream 9574 35610898 ~ 35611180 (+) True G171088
XR_005642039.1 lncRNA upstream 61488 35558376 ~ 35559266 (+) True LOC120575670
XR_005642030.1 lncRNA upstream 86693 35529788 ~ 35534061 (+) True LOC120575663
TU231877 lncRNA upstream 118278 35497967 ~ 35502476 (+) True G171049
TU231879 lncRNA upstream 122625 35497114 ~ 35498129 (+) False G171049
TU231959 lncRNA downstream 100311 35721136 ~ 35721344 (+) True G171121
TU232017 lncRNA downstream 352423 35973248 ~ 35976436 (+) True G171171
TU232020 lncRNA downstream 366819 35987644 ~ 35990193 (+) True G171174
TU232024 lncRNA downstream 388608 36009433 ~ 36011192 (+) True G171177
TU232044 lncRNA downstream 458868 36079693 ~ 36079947 (+) True G171194
XM_039776755.1 mRNA upstream 10168 35603863 ~ 35610586 (+) True LOC120543615
XM_039826466.1 mRNA upstream 126493 35354290 ~ 35494261 (+) True amot
XM_039826467.1 mRNA upstream 126717 35354289 ~ 35494037 (+) False amot
XM_039826476.1 mRNA downstream 38891 35659716 ~ 35668472 (+) True LOC120575650
XM_039826478.1 mRNA downstream 42574 35663399 ~ 35668472 (+) False LOC120575650
XM_039776756.1 mRNA downstream 79239 35700064 ~ 35703084 (+) True LOC120543616
XM_039776757.1 mRNA downstream 155154 35775979 ~ 35777625 (+) True LOC120543618
XM_039826485.1 mRNA downstream 347578 35968403 ~ 35971793 (+) True LOC120575655
unassigned_transcript_958 other upstream 884 35619799 ~ 35619870 (+) True trnaw-cca_19
TU231818 other upstream 297463 35322260 ~ 35323291 (+) False LOC120575668
TU231692 other upstream 532857 35083889 ~ 35087897 (+) False LOC120575607
TU231682 other upstream 580383 35039942 ~ 35040371 (+) True G170896
TU231480 other upstream 1178604 34436960 ~ 34442150 (+) True G170775
unassigned_transcript_960 other downstream 878 35621703 ~ 35621774 (+) True trnaw-cca_21
unassigned_transcript_961 other downstream 2770 35623595 ~ 35623666 (+) True trnaw-cca_22
unassigned_transcript_962 other downstream 3716 35624541 ~ 35624612 (+) True trnaw-cca_23
TU232287 other downstream 1641091 37261916 ~ 37262336 (+) True G171409
TU232385 other downstream 1922775 37543600 ~ 37613796 (+) False G171468