RNA id: TU231480


Basic Information

Item Value
RNA id TU231480
length 396
RNA type TUCP
GC content 0.55
exon number 3
gene id G170775
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 34436960 ~ 34442150 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGCATGCAACAGTGCAGGCAAGAGGAACACGTTCAAACAGGACACGTGACCAGGGGGCCTTCCTGTGGGGGGGTCGTAGGAAACAGAGATGAGGAATCATTCCTGGACCAACTTACTGAATGTCTTTGTCCCATACCCATCATCACCTATCCCCAGGATGTCCCCTTTTGAATCAAATGACCCTGGCTTGGCATTGAACTTCACAGTCTTTAGACGTGCTCGCTCTTTCCTTTCCACCCGTCTCTTGCTGGGGATGACACCCATTTCCTCACTGTCCCCATGTGGGGTGACACGGCGGGCCTGCCACCACTCATCATCTGAGGCGTTGATGACGTGGAGGATGTCCCCATACCTGAAGCTGAGCCCTTGGCTGGGGAGGCCGCTGTCCTTTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231476 lncRNA upstream 2714 34429031 ~ 34434246 (+) False G170771
TU231475 lncRNA upstream 7621 34418081 ~ 34429339 (+) True G170771
TU231465 lncRNA upstream 52462 34376634 ~ 34384498 (+) True G170762
TU231435 lncRNA upstream 100612 34334733 ~ 34336348 (+) False G170735
TU231428 lncRNA upstream 128191 34307928 ~ 34308769 (+) True G170729
TU231628 lncRNA downstream 327114 34769264 ~ 34769485 (+) True G170849
TU231630 lncRNA downstream 333181 34775331 ~ 34775777 (+) True G170851
TU231631 lncRNA downstream 340800 34782950 ~ 34783189 (+) True G170852
TU231648 lncRNA downstream 475743 34917893 ~ 34919098 (+) True G170865
TU231649 lncRNA downstream 479156 34921306 ~ 34926254 (+) True G170866
XM_039776749.1 mRNA upstream 109962 34313035 ~ 34326998 (+) True si:ch73-261i21.5
XM_039778295.1 mRNA upstream 127306 34308897 ~ 34309654 (+) True LOC120544501
XM_039778293.1 mRNA upstream 206183 34228620 ~ 34230777 (+) True bsx
XM_039776690.1 mRNA upstream 211855 34220563 ~ 34225105 (+) True lim2.1
XM_039777408.1 mRNA upstream 933708 33274385 ~ 33503252 (+) True opcml
XM_039777816.1 mRNA downstream 353841 34795991 ~ 34823406 (+) True zpld1a
XM_039777814.1 mRNA downstream 353841 34795991 ~ 34823406 (+) False zpld1a
XM_039776862.1 mRNA downstream 394080 34836230 ~ 34917369 (+) False alcama
XM_039776861.1 mRNA downstream 394115 34836265 ~ 34917369 (+) True alcama
XM_039776751.1 mRNA downstream 610292 35052442 ~ 35073453 (+) True LOC120543611
TU231434 other upstream 100612 34332414 ~ 34336348 (+) True G170735
XR_005636585.1 other upstream 1084631 33352264 ~ 33352329 (+) True LOC120544785
XR_005636522.1 other upstream 1432621 32955892 ~ 33004339 (+) False pknox2
XR_005636542.1 other upstream 2016558 32401923 ~ 32420402 (+) False cfap58
TU231056 other upstream 2372230 32064167 ~ 32064730 (+) True G170409
TU231682 other downstream 597792 35039942 ~ 35040371 (+) True G170896
TU231692 other downstream 641739 35083889 ~ 35087897 (+) False LOC120575607
TU231818 other downstream 880110 35322260 ~ 35323291 (+) False LOC120575668
unassigned_transcript_958 other downstream 1177649 35619799 ~ 35619870 (+) True trnaw-cca_19
unassigned_transcript_959 other downstream 1178604 35620754 ~ 35620825 (+) True trnaw-cca_20

Expression Profile