RNA id: TU231631


Basic Information

Item Value
RNA id TU231631
length 240
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G170852
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 34782950 ~ 34783189 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gatgtttctcatgttgtaatatgctggtgttttattttgtccacaagGGGCGCACTGGGTTAAACCCAGAGAGAAACTCCTATCACTAAAGATGAATAAGCTCATTAAAAAATACTAATCGCTACTTTGCTGTGTCGGAGTTAGATTTCAGAACAACTTTACATCAGTTTGGATGAATGATTCGATTAGAGACACATTAACATGCTTGGTTAATTCGCGGCCAAACTCAAGTAGGTTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231630 lncRNA upstream 7173 34775331 ~ 34775777 (+) True G170851
TU231628 lncRNA upstream 13465 34769264 ~ 34769485 (+) True G170849
TU231476 lncRNA upstream 348704 34429031 ~ 34434246 (+) False G170771
TU231475 lncRNA upstream 353611 34418081 ~ 34429339 (+) True G170771
TU231465 lncRNA upstream 398452 34376634 ~ 34384498 (+) True G170762
TU231648 lncRNA downstream 134704 34917893 ~ 34919098 (+) True G170865
TU231649 lncRNA downstream 138117 34921306 ~ 34926254 (+) True G170866
TU231711 lncRNA downstream 314289 35097478 ~ 35098788 (+) True G170911
TU231714 lncRNA downstream 317707 35100896 ~ 35101325 (+) True G170914
TU231725 lncRNA downstream 350012 35133201 ~ 35133493 (+) True G170925
XM_039776749.1 mRNA upstream 455952 34313035 ~ 34326998 (+) True si:ch73-261i21.5
XM_039778295.1 mRNA upstream 473296 34308897 ~ 34309654 (+) True LOC120544501
XM_039778293.1 mRNA upstream 552173 34228620 ~ 34230777 (+) True bsx
XM_039776690.1 mRNA upstream 557845 34220563 ~ 34225105 (+) True lim2.1
XM_039777408.1 mRNA upstream 1279698 33274385 ~ 33503252 (+) True opcml
XM_039777816.1 mRNA downstream 12802 34795991 ~ 34823406 (+) True zpld1a
XM_039777814.1 mRNA downstream 12802 34795991 ~ 34823406 (+) False zpld1a
XM_039776862.1 mRNA downstream 53041 34836230 ~ 34917369 (+) False alcama
XM_039776861.1 mRNA downstream 53076 34836265 ~ 34917369 (+) True alcama
XM_039776751.1 mRNA downstream 269253 35052442 ~ 35073453 (+) True LOC120543611
TU231480 other upstream 340800 34436960 ~ 34442150 (+) True G170775
TU231434 other upstream 446602 34332414 ~ 34336348 (+) True G170735
XR_005636585.1 other upstream 1430621 33352264 ~ 33352329 (+) True LOC120544785
XR_005636522.1 other upstream 1778611 32955892 ~ 33004339 (+) False pknox2
XR_005636542.1 other upstream 2362548 32401923 ~ 32420402 (+) False cfap58
TU231682 other downstream 256753 35039942 ~ 35040371 (+) True G170896
TU231692 other downstream 300700 35083889 ~ 35087897 (+) False LOC120575607
TU231818 other downstream 539071 35322260 ~ 35323291 (+) False LOC120575668
unassigned_transcript_958 other downstream 836610 35619799 ~ 35619870 (+) True trnaw-cca_19
unassigned_transcript_959 other downstream 837565 35620754 ~ 35620825 (+) True trnaw-cca_20

Expression Profile