RNA id: TU231877


Basic Information

Item Value
RNA id TU231877
length 4510
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G171049
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 35494684 ~ 35502476 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagcattgttaccacagagaaataatccaccaaacacaattttttttataaattgctTGCTACAAGGGTTTAGCTGTAAGAGGAAGCAGCTTGTTACTTAGACAGTCATAGAGATCTGTAAACTCCCATAGTGTTGCTGGAGGCTGGTTGGACCAAATGTATTGGCtacatttttgttgcatttattgCACTACTTATTTTTTAAGAGTGTGTTTCTTTGCTATATTACTTTAAAATGTCTGACATTAGGTATTGTATTTATGTGtattgatttataaaaaaaactacagttacATTTCCAGAGCCAATGAATTAGTCAGATAGGATGTTGCCTATCTGATGTAATAGACTTGTTTTGCTCCATGTTTTGTGCAAAGTACCTAGCTTCTTAGTAGCCCTGGGCTTTTAGTGTTTGCGAACTGTTGTGGCATGTTGACTTCAGGCACACAAAGCTCCCTGAGTAAAACTGCTAAATCTGATGAGCTTTCCTTTTTTGTTATCGAATTGTCCTAACATATGTTGCCCTAAAATGTGTTCTTCTTTTATGCCTGTGCTGGAAGATGGAGTGAGCAGAGTTTGTTATATGTACTGCCatgttatatttattgtatAATTACAgacatatttactgtaatgtgACTGGCAGTAAATATAACAGTGACATCTGCTTTAAATAGCAACAAATGTAAATTTTCCTGACAGAGATGCATTTTGGAAGAACTACAAAAAAACTGAGATTGTGTTCTATTCTGAAAAAATATCTTTAATTTGATTGGCAGAAAAGGGTTCAACAATTTCAAAAATAGGATAATTCTAGCAAACTTACTTCTTGAAGCCTTGGCCACCTAAAGTCAAAGTGCTGCATAGGTCAGTAAGCATGCACAGTCCTCACAAGTGATTTCGAAACATCATGCAGGTTGCACTAGATCCAAACAGGCTAAGGGCTGATTATGAGTATCATGAAGaacattcttttgtttttagaaACATGGTGCCCACTACATGACTGTGTTGGGCCTTAGCCACAAGAGGGGAGTGAGAGTCTGACAGTATGGTTGGCTGCCTCCATGACCCCACTGGTTGTGGTCAATCTAATAGCAGAGGCTCTTAAAGTCTTTGAGCATTTCACTTTGCATGCTTAAAGAAGAAGATGGACGGGATTTATCTTTTACTCTGATGCACATCATGTCATAAAATTGCACATATGCACACTGTATtgtgaatatttaaaattgCAGGCATTTGTATTACCATACCATCCATCTGACTTGTTACTCAAatcaaacaatgaaaagtatttGCAGACACCATTTAACTGACTTAAGGTTTGATTTGAATTCATCGGTTTGGATGTGAACATGAAATGTATGCAACAGTCGACTAATTCTGCTAATTAAGTATCATTTTGACAAGTTATCAGACTAGGACACTTTTGcattacttaaagtgctcatattatgcttttttgctttttccctttcctttattgtgttatatatcttcttgtgtgcatgttataggtttacaaagtgaaaaagccctaagtccaccccaaagagacttaccatctccaacagaaaacactgttcacaaaccgcTCTAAActgctctgttgtagtccagcctttacttgcgtcactttgtaacacacgttataatgctcgcctagctgctagcgtggcatgccctcatactctgcttctgactggtactgtgcatgtgcgactcccaacaaagatggaacagaagtgagatgcctcactctagctaaaacagagagctcaaaacaaagagtgaaaagaggagctgcacaatgtgcagtacaacaaaaatatggtgttttttgaaaattaaaccatgtaaacctattctggtacaacctcaaaatacaattatgaacttgaaaatgagcataatatgagcactttaacactaTGCATAGTAAATGACTGTGAATGTCGTCCATTAGATTTCAGACGTAGCCTCTCAGATCGACATATCATGCTTTTGACCAAAGGTAATACAATGGATTAATACTCATCCCTGTTGTTAAAAAGGCATCACATAAAATCAGGTGAAATAAACTTCAAGAGGGGTGAAGTCATTCCTCCAGTTTCAAGAATTTGGTTGAAAATAAGTGACAATATTTTGAGACTCAATTATTTCAAGACCGCCAGTCATGCTTTTTCAGAAATTGAATTAAGTGAGTGAACTCATGGAGTGATATGGTGGTGACAGGTGTTGTTGGTTTTAAATCAAGCCACCATTCCAGAATAATTGGGCTTTGCAAAATCGGAtgcttttgttttgcttttgttgttAAATATAAAATTTCCAGCAAGGTTAATATAACTATATTAACCTTAATCTATAATCTATAAGAGGTCCACTGGCCACAATTTTTGGACCAAAGAAGCTAAGTCAACTAATTTGTTATTGCAGAGGGTCATTAGTCATTAGGCATATGTCACTAAAGGACTGTGGGACTAAATAAGGAATGCACTGATATGCTGTAACTGCATATACCTGACATGTTATATAGGAATAAGGACTTGGACCACTACTTAAACTCATCAGCCAAAATGAATGGTGTTTTTCTCCACTACATCAATCTATAATCCTTGTGTgtgaaataatttgaaaatCAAGTTGCTTTGCTTCCTAGCACAGATATGCATCCTTTGGTATGACTGAAACTGCCAACACATTTTTAGTACACTATTGCTTTTGAGTCCAATCCCATATGGTTGATGGATCCTTAAATGTGAAAAGCACAAGGCTAATCTATTGATTAGCCTTGTGCTTTCAATAGTGTCCACAAATTTTTGCCATCATCAGCACATTGTAAAGTATCCTTTATGCTGGTACTGTAGACCGTGGACCTTGTTGAAACTGTAATGCATCAGGTGGGATCGCTGCAGGTTTCTGATGGTAGACCTCAACCTCCACAAAGTCATTGGATTTTGGTCAGGGTTTAAATGGGTTTCATATGCCCAGTACCATATGAACCAAgtaaaaacactaaaatgtagCTGCAAAAAGTAATTTACGTATCTGTTGTTGGCATTCCCAGCCTTGAAACACAATTCATAGAATGACGGATATTTTGAGGAGGAGCCTTCATTCATCACACCAGAACATTTCAAGATACAAAGATCTTTTCTTAGCTGGTTGAGAAGGGGAAATGCCAAATACCATAAGATGTGCAATTGGAATCAATTAAACTCTGTGTTCTTTGTCAATCAAAACACGATCTTGTTTAAAGTTTGGATTTCAATATCTAGCCTTACAACTACAGTGTAGAGCTCTGAGAAagggggcagtggtggcctaaaggttagagaagcgagcttgtgaccgggaggtcgtcggttcaaaccacagactgaCAGGATAAAAtggggtggggaaagtgaaagaacagcgctttgtccctccctcattaccaccactgaggtgcctttgagcaaggcccttaacctccaaccgctccagtggagctgctcagtggctagcagatcagactgtggttgtactgggcagcttccaggtatgaatgtggaactgtgtgaatgtgacaggtcgttgttgcaaatgagaagttgttctcaatcgacttacctggataaaataaaggttaaataaaaaaaaaaaaaagaaagatcacAAAATGAGCTGGAAAATATCTGTGATCAGACCAACTGTAGGTCTCTAAATTGAGAGAGGACTAACAAAACAAGCATAGATATAAAATCCAAACATTTAATACGTTGGAACCAGTGAATACTTGGCTTTTATCAAGTAGGTGGTTGACACAGTTTCAGCTCTACTACATTGTGTTTCCATAAGGCACTTATGGTACTTAAAATTCTTGTAGTTAAGGATTGTTTTCGTACTGGCACTTAAATGAACTGCTTTATGAAATATTGCCAATATGCACTGTTGCTGGTGATGCCTCTGTCTCTGCCAGATTAGTTTTTTAAACCATCTACTAAAAAGTTTGAACAGAAACATTTTGTAACTGACAGATATGCGCTTTCATCGTCCCACCTGAAGGCTCAACACAGGCCTCAGCTCTGCACCAAAGCAGAATAAAACTTTGAAGCCATTTCCGACACTTTTTTGCAGTTACtgctttaaaaaatacaaatcgTGTTACAAGTGCTTCTACAACTGCCGCAACATAGATGACTAGTGTCATGTGGACATATACAACATTTGTAGTTCAGTCTCATTTGTCTTTATCAGGCAATTGTCATAAAGTGTTTCTGTACTGGCACTTTTCATTCACAATTGTCATTCACTGAAAATTCCTGGATGTACAAAATTCCTGGATGTACAATATTCCTGGATGTACAAAAACAGTTTTCCCATAATGTTACAAATACCTGGCAAAGAAAAACTGAATTCAAACTGTTATTCCAACTTGCTGAAAATATAAAATTGAAGCAGTTTACTGAAGCAATTTTAataactgtaaaaatgtcaatgttTAATGAATGTGTTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231878 lncRNA upstream 185 35494861 ~ 35497782 (+) False G171049
TU231880 lncRNA upstream 1037 35494684 ~ 35496930 (+) False G171049
TU231833 lncRNA upstream 155356 35342407 ~ 35342611 (+) True G171011
TU231824 lncRNA upstream 169020 35328562 ~ 35328947 (+) False LOC120575657
TU231823 lncRNA upstream 171959 35325602 ~ 35326008 (+) True G171001
XR_005642030.1 lncRNA downstream 27312 35529788 ~ 35534061 (+) True LOC120575663
XR_005642039.1 lncRNA downstream 55900 35558376 ~ 35559266 (+) True LOC120575670
TU231925 lncRNA downstream 108422 35610898 ~ 35611180 (+) True G171088
TU231959 lncRNA downstream 218660 35721136 ~ 35721344 (+) True G171121
TU232017 lncRNA downstream 470772 35973248 ~ 35976436 (+) True G171171
XM_039826466.1 mRNA upstream 3706 35354290 ~ 35494261 (+) True amot
XM_039826462.1 mRNA upstream 3930 35354289 ~ 35494037 (+) False amot
XM_039776755.1 mRNA downstream 101387 35603863 ~ 35610586 (+) True LOC120543615
XM_039826476.1 mRNA downstream 157240 35659716 ~ 35668472 (+) True LOC120575650
XM_039826478.1 mRNA downstream 160923 35663399 ~ 35668472 (+) False LOC120575650
XM_039776756.1 mRNA downstream 197588 35700064 ~ 35703084 (+) True LOC120543616
XM_039776757.1 mRNA downstream 273503 35775979 ~ 35777625 (+) True LOC120543618
TU231818 other upstream 174676 35322260 ~ 35323291 (+) False LOC120575668
TU231692 other upstream 410070 35083889 ~ 35087897 (+) False LOC120575607
TU231682 other upstream 457596 35039942 ~ 35040371 (+) True G170896
TU231480 other upstream 1055817 34436960 ~ 34442150 (+) True G170775
TU231434 other upstream 1161619 34332414 ~ 34336348 (+) True G170735
unassigned_transcript_958 other downstream 117323 35619799 ~ 35619870 (+) True trnaw-cca_19
unassigned_transcript_959 other downstream 118278 35620754 ~ 35620825 (+) True trnaw-cca_20
unassigned_transcript_960 other downstream 119227 35621703 ~ 35621774 (+) True trnaw-cca_21
unassigned_transcript_961 other downstream 121119 35623595 ~ 35623666 (+) True trnaw-cca_22
unassigned_transcript_962 other downstream 122065 35624541 ~ 35624612 (+) True trnaw-cca_23

Expression Profile