RNA id: XM_039826476.1


Basic Information

Item Value
RNA id XM_039826476.1
length 1549
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC120575650
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 35659716 ~ 35668472 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCACCTGGAAAAGTACCCGGCCGATAAAAAAGGCTGCTGACAcgtggagagagacagagccacTGCCTTTATTGGAACAAAACCCTAAAACAGGTTGAagcaataaagataaaaaagagATCATGTATGCCAGGGCTGTGTGGGTGGAGCATGGCAAGGAAGTGGAGGGAACTGCCCCAGACAACTGGATTGATGTTGACAACAAAACCATTAGATGgccaaaaaaaggggaaaaggcAGCTTTCCTCAATAAACACCCCCCTCAGGATGACTGGATGACATTCACCTTGGTGAAACGTAAAATGACTTCCGTAAACATTTGTGAATGCGATGATTATGACATGACAAGCTATGTCgaggaggaagagcaggaaaATGAGGAAGtaagaggaaggaggaaaaaGACCCAACGCAAGTTTGAGGACTATGTTCTTGAATCTGACGAGTTGGAGGCAGAAGAAAACGTCACTGATGCCATTGTCAAGGCGCCCTCCTTTCCCATTCCACCAACAAAGGTGACTAAGTCCATCCAGATTGAGTCTGCTGGATTTAACAAAACGTTCACTGACATTGGACGTTCAAATTCAGCCAGGTCTCACCAAGTGCAGGGTGCTGGGTCCAGGGACAGGTCCACAGGCAactcTGGACATTCAAATGTAAACCAAGCCAGCCAGTCGAGGGGTGTTGAGCCCAGTCACCAGTCCAGCCACAGCGACGGGTCCCAGCACAGCGATGGGTCCCAGCAGAGCGACGGGTCCCAGCACAGCAACCCATACCGACACAGAAAGCGGTCCAGGCACAGCGACGGGTCCAGGCACAGCGACCGGTACCGACACAGGAAGCGGTCCAGACACAGTGACGGGTCCAGGCACAGCGACGGGTCTCAGCAAAGCAAAGTGTACCAACACAGAAAGCAGGCCAGGCACAGCGACCAGATGGGACACGACAAGCAGTCCAGGCACAGAGATTTGTCTAAAAACGATGACGAAAGTGTTCAAACGCCACTTTCAAGATACACTGGGAGGTCTTTCTCAGAGCAGAGTAACAGGTCCTCTGCACATGAATCCAGTACAGGGCCTCGTAGGGAAACGGACTTAAGATTTCCAATGGCCATGGCAAagtTTCAGAAAAAAGTCTTAACTAAATTGGTGGATATCCACATGGAGGTCAGAAGGCTGGGAAAAAGCGAGCCTCCCCTGTCATCTGCCCATATAGAGCTACTGGAGACAATGGAGGAGTTTGACAGACAGGAGGAACGCCTGAAGGACAAGCAAGCCTTTGAGTCCCTGgttttgCAACTTGCAAGAATTGGAGGGAAAGATGTAAGGGATTGTGTCCACAAAATTCTTGACAGGTATTTAACAGGATAGATAACAGGATCCCTACATGTAACATGCATAATACACATAACACGATATGTTTCTTGTCACAGTTTTCCAGTCGACAGAGGATGTTACATATGTTAACCAACTTATACTATACACTTTATTCATCAGGCCACTGTCTGAAACAAGTAAGCTGTGGAAAAACAGGAAGAGCTCTAGAGTT

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231925 lncRNA upstream 48536 35610898 ~ 35611180 (+) True G171088
XR_005642039.1 lncRNA upstream 100450 35558376 ~ 35559266 (+) True LOC120575670
XR_005642030.1 lncRNA upstream 125655 35529788 ~ 35534061 (+) True LOC120575663
TU231877 lncRNA upstream 157240 35497967 ~ 35502476 (+) True G171049
TU231879 lncRNA upstream 161587 35497114 ~ 35498129 (+) False G171049
TU231959 lncRNA downstream 52664 35721136 ~ 35721344 (+) True G171121
TU232017 lncRNA downstream 304776 35973248 ~ 35976436 (+) True G171171
TU232020 lncRNA downstream 319172 35987644 ~ 35990193 (+) True G171174
TU232024 lncRNA downstream 340961 36009433 ~ 36011192 (+) True G171177
TU232044 lncRNA downstream 411221 36079693 ~ 36079947 (+) True G171194
XM_039776755.1 mRNA upstream 49130 35603863 ~ 35610586 (+) True LOC120543615
XM_039826466.1 mRNA upstream 165455 35354290 ~ 35494261 (+) True amot
XM_039826462.1 mRNA upstream 165679 35354289 ~ 35494037 (+) False amot
XM_039776756.1 mRNA downstream 31592 35700064 ~ 35703084 (+) True LOC120543616
XM_039776757.1 mRNA downstream 107507 35775979 ~ 35777625 (+) True LOC120543618
XM_039826485.1 mRNA downstream 299931 35968403 ~ 35971793 (+) True LOC120575655
XM_039826475.1 mRNA downstream 648371 36316843 ~ 36325638 (+) True LOC120575649
XM_039776763.1 mRNA downstream 735942 36404414 ~ 36406390 (+) True LOC120543623
unassigned_transcript_962 other upstream 35104 35624541 ~ 35624612 (+) True trnaw-cca_23
unassigned_transcript_961 other upstream 36050 35623595 ~ 35623666 (+) True trnaw-cca_22
unassigned_transcript_960 other upstream 37942 35621703 ~ 35621774 (+) True trnaw-cca_21
unassigned_transcript_959 other upstream 38891 35620754 ~ 35620825 (+) True trnaw-cca_20
unassigned_transcript_958 other upstream 39846 35619799 ~ 35619870 (+) True trnaw-cca_19
TU232287 other downstream 1593444 37261916 ~ 37262336 (+) True G171409
TU232385 other downstream 1875128 37543600 ~ 37613796 (+) False G171468
TU232389 other downstream 1875128 37543600 ~ 37601804 (+) True G171468
TU232416 other downstream 1937558 37606030 ~ 37616661 (+) True G171483
TU232382 other downstream 1998749 37667221 ~ 37669599 (+) False G171468

Expression Profile