RNA id: TU232020


Basic Information

Item Value
RNA id TU232020
length 233
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G171174
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 35987644 ~ 35990193 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agtggtacggttgctctatagcgccccctaattggatttagcacttgggcacatttttgacggcctcaatatatacgaaaactcacaaaaattggcgcacacataaacacctgggagctttgcatgactgtacagcgatttgggCCATACCtctaagcgggctccatagcgccccctaaggcGTGGAAGGCCTTAAcatggacatagttgctccgatcatcaccagatttaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232017 lncRNA upstream 11208 35973248 ~ 35976436 (+) True G171171
TU231959 lncRNA upstream 266300 35721136 ~ 35721344 (+) True G171121
TU231925 lncRNA upstream 376464 35610898 ~ 35611180 (+) True G171088
XR_005642039.1 lncRNA upstream 428378 35558376 ~ 35559266 (+) True LOC120575670
XR_005642030.1 lncRNA upstream 453583 35529788 ~ 35534061 (+) True LOC120575663
TU232024 lncRNA downstream 19240 36009433 ~ 36011192 (+) True G171177
TU232044 lncRNA downstream 89500 36079693 ~ 36079947 (+) True G171194
TU232049 lncRNA downstream 100024 36090217 ~ 36090515 (+) True G171199
TU232050 lncRNA downstream 100382 36090575 ~ 36090808 (+) True G171200
TU232056 lncRNA downstream 112769 36102962 ~ 36109752 (+) True G171206
XM_039826485.1 mRNA upstream 15851 35968403 ~ 35971793 (+) True LOC120575655
XM_039776757.1 mRNA upstream 210019 35775979 ~ 35777625 (+) True LOC120543618
XM_039776756.1 mRNA upstream 284560 35700064 ~ 35703084 (+) True LOC120543616
XM_039826476.1 mRNA upstream 319172 35659716 ~ 35668472 (+) True LOC120575650
XM_039826475.1 mRNA downstream 326650 36316843 ~ 36325638 (+) True LOC120575649
XM_039776763.1 mRNA downstream 414221 36404414 ~ 36406390 (+) True LOC120543623
XM_039826379.1 mRNA downstream 1197616 37187809 ~ 37223409 (+) True LOC120575584
XM_039776717.1 mRNA downstream 1688408 37678601 ~ 37695632 (+) False LOC120543587
XM_039776716.1 mRNA downstream 1691738 37681931 ~ 37695632 (+) False LOC120543587
unassigned_transcript_962 other upstream 363032 35624541 ~ 35624612 (+) True trnaw-cca_23
unassigned_transcript_961 other upstream 363978 35623595 ~ 35623666 (+) True trnaw-cca_22
unassigned_transcript_960 other upstream 365870 35621703 ~ 35621774 (+) True trnaw-cca_21
unassigned_transcript_959 other upstream 366819 35620754 ~ 35620825 (+) True trnaw-cca_20
unassigned_transcript_958 other upstream 367774 35619799 ~ 35619870 (+) True trnaw-cca_19
TU232287 other downstream 1271723 37261916 ~ 37262336 (+) True G171409
TU232385 other downstream 1553407 37543600 ~ 37613796 (+) False G171468
TU232389 other downstream 1553407 37543600 ~ 37601804 (+) True G171468
TU232416 other downstream 1615837 37606030 ~ 37616661 (+) True G171483
TU232382 other downstream 1677028 37667221 ~ 37669599 (+) False G171468

Expression Profile