RNA id: TU232056


Basic Information

Item Value
RNA id TU232056
length 6791
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G171206
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 36102962 ~ 36109752 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCTAAGTGTACTTAGGAATAAAGACAGTATCTCTATGTGTATTTCCattcaaattttattttataaaataacaacaacaacaacacaaaagcaCTGAGTTTCAGTACAAATATCACTCCTTCACTCAAGCAGAGGACATGGCTTTCTTGGCCTGACATTGATAtcatgagagaagagagaagaggtgaACAGCCCCTTTCCGACATTGTGTTGTTGCCACACTGAGCCATGAGCTGTAGAAGGACTTTCCTATTTACATAAAGAATTTTCAAGAGGGTAGTACTTTGTAGAGAATGCATACAATAAACAAATCCAGAATCAAATGGACCCCAGAATATAGATTCATGAatttacagtttgtttttttatgatggTTACATTTTACGTATAATTTCTATACTACATAAGGTTTGAGGTAAAAAATAACATTCTTCCTATAGTTTAGTATCTGTAACATGCATATAACCATCATTCCTCAAATAGATTTCTTTAAACTTTACACTCTATGCATGGTAGGAGCTCAGGAAGCCCCATTCCATTGAGAATGGGGCTTTTTCAGTTAGAATGAGCATAAATGGATCACTGAAAATGTGACAAAGCCTGCTTCAGTAATGTCAAACAACCCAATGAAAGTTCAAACCCATTTTACTTTCTCACCTCTGCACAGCTGGCCACTCACAATGTGAAATGGGTGTGAATGTTGGATTGGCTATTTTTGGAAAGTTACAGAAATGGTTGGACACAGTCCCCATAATTCTACAGCGGAAATGTGTGGGGGAAGGGGGTTCCGAAGCAGTTCAAAAATCTGACAAGCAGTTCTGATGAAGTATACTGGCCACTTAACAGAGCCATAAAGACTAGTCGAGGCAGGTCTAAAACACTCAAGAGATCCAGAGACACAAATTGGCTTTCTTATCTAGCCGGCCCTGTAATGGCCCATGTGATGGGAAAAGATTGAAATAAAAGCTATCTCTGAAGGTCTATGGAAAGTATTATTAGAGTATTACTGACTTTCTTGATGAATTAACTGCAAACATATTGAAAAAACAGATTGTCCTCACCAAAAAAAACGTCCATATAGGTCAATTATGTCAGTGTAGGGAGGGATGGGTAAAAAAAGCATAGGACTTTCACCAAGGAGACCACTGTTTGTGTCTtgtgtgaaaccaaaatcaacTTTGACTATTTTTAAGTTACTACATAACTAACTTTGTTAGTATGTAACCATGTCACAGACTTATGTCTGTAACAGACTTCCTCATTTTAagccaaaccatgatcttttcctaaacctaaccaagtagtctGGTTGCCTTAACTTAAACAACTAGTTCAGTTAAAACAacattaaccatttgtttaaaacTGAAATTGGAAAACTTCACTGCCTGGTACGGAAACAATTTAATTTGATTCAgttttatagtgtcaaatcctaACAGAAGTTATCTATCTAGTagaaaagggagggagagactaGCTGTGTTtgaaaccgttccctatcatAGTAATCGTCATAGTGCACTATAAAGTGTGTTCGCCATCTTGTAGTGGTGTTCAAATTCTCCCCAGtgaatttcattcactatatagtccactataaaatacccacaatgcacagctaatttgagtgtaTATACGATGTAGCCTAAGGTCCCAcggaaactgaaaaggaaaaatggtgCGGGCTTTGGTTTCTAAACAttggaaatgtaacatgcaacatatataatatacaacctTTTGCTATTCTCCTGAGTGCTCagtttgtttcagggacgtattagaagtattttagttttggtttgtttacatgatgatTGGTGCTAAACTAAAGTCTATGGGgaaatttagttttttgtgattttcgTGAAAACTGCTAGGCGAATCTTTTAGAAAAGATATAGCACACCATTCCTGGTCAttcgcacttttttttttgcgattGTGTTCGCAACACTGCGTGACGAGTAGCGGGACAAAAAATTTGGCAGGAGATGGAGAAtgagaatgttttgttttttttatattactttttggggctttttccctttatttagaaaggggatagacatgaaagggggagagagatgggggatgacacgcagcaaagggtaGCAGGTCAGATTCAAGCCCTGCaccactgcaggactcagccaacgtGGGGCAAACGCTCTttctgggtgagctagaggccgccccggaGAGTAAGAATGTTAAGTATGACGATAATAGTCATTGTGCACTGTATTTAGTTTACACTAATGCTGGTTTTGATGCTGCAGTTGGGCGGATGCAAGTGCAGTTTCATATATTATCATATTTCATTTTGTGGCATTTAGTTGGTTTCATCTCAGTGTTATAGATGTGTTTTTATTGCTATTATTTGTCATCAAAATTATATTTCAATCAATATCCAAATCATCTGTGATGCGGACATGGTACTAAAAATGTAGTGGCTCGGTGGCCTGGGTCAACCCATGACTCATTTCTATTGAGTAACGGCAGCGTTGGGTGCAGACATGAGGCTGGAACTGTGTTGATGGCTGGCTTCTAGGTAATCATGATTATACATATCCTTAACAAATTGTATTCTTTCTATACTGTATTGTCTAACCTATGTTTGCCTGAGAAAGACCCAGCAGGGTCAAAACGTTGCAGCACAATAAAAGTATGGGAGAATTAGCAGAGTGTGGGCACCTCATTCTTTTAAGTTCTAACCTGTGTGCTAACCTTGCAAGGGAAAGTGGATATCCCCTCAAGAGGTGGCTAATCACCCCTTTTACAAACCCACAGAGCGCAGAGGAGAGGAATTACAATGTGCGCCACAGTCAGGCACGCGACACGCTGTTGTGGAGGGCACCATCGGACTTCCAAAGGGCAGATAGCGTTGCTGTGATGCCACAGTAGGAACCGTACAGGCCCGAAAAGGTGTGCAAAATTGTGAGGGCACGTGCTGTGCTACATAATGTGGCACAGCTTAAAGATGTGGCTGCATTCCCAAAATATAGTGGCGTTGTCCCCAACCCCGAACCCGACCCTGACCCTCAGACATTTGAGCCAAATGCTGCTACCGTAAAATTACAAGAGGTACGGAAAGAAATACTACTTTTTATTAACAAATTCTTTCAGTGTCAAGCTTCCGTATGTCATACAACACATTTTTTATCTCTGTTAAAGGATAACTACCGTTTTTTGCAACCTGgacctattttcctatgtttttctgtctcagtgactgatggaacaacaatctttgacattggtcctgtattaagagagatctctgcagtcggcagcagtgaaacaagctacaatgtcagttaatagggcaattgtccagcttgtatttaccttcactaaagtgcttgttttgccgctgacaggctcagattaatattctaagtgtctgacaacatttctgCTAGGTTTGCGGTGGAAAAAAGTGTCCgtgcgccaggcgcatggttcaaaagggttgtacttagtgtcttaattaatcataggtgtgttttgagcGTAACATGCCAaaaatcagagtgtcatctcccattccctttaaaagccaggcgcatttggacatataatactatttcacattgtaatatttttatttttttaatcttttgcatgtttgtgtgctgctgcgcgtccctgtgtgtgtgcctaaaaataataacaatgaataataacaatgaaatgctgcattattgactttagaacaggtttttgttggtcaatggcgtgatcgctttccgctgcctcaatatagcaatacacccagaatgcaacacacctccctgtaagaccagcatgcccataggccacagatgggcgcaggtgcatttgttatttaaacgacgtgggcgctggatgggaaactgacaactgggtcggtcttaaactagcaaagagacTTGCGGCTTTTCACtgtgccgggtgcaagataaGGCCCAGAAACCTCAGTGTATGTAGGGGAATGTTGTACGTTGGTGGCTAATACTTTCTGACACATAAAAACTAAAAGGATATAGGAATCACAGTATAGGTATTGCTCTGTTCATTGGTGGGCTAGGTCCAACTGGACGATCACTTTCCAGTGTTTGCTGGTGCAAGTCACGCCAAGATGAACTGATGATGATGGGATGGGAGAAGGGAAAAGAGCCAGCCCCGGCACGTGCGTAGGCAGACTCGGAAGCAGCCTAGAGCGGCTCTTTGGCAAGGCGGCTCATAAAAAATGTCAACTGTTGGGGTGACCTCTAGTTCACCCAGTAGGAGCGTGCGCCTCATGTAGGCTGAGTTctttgcagcggcccaggttcgaattaaaaaaaaaatgtcatctgTTGTGTTTTGTCCTCATTTTGTATTGTAGTCCATTGGTGAAGAATGTGTGTCTGTCCTCAAAAACATAAATCAGTTCTCACGAGGTCAGATGTCGGAACACTAACACTGAACAACCATACGACCCACACTGTAACAACAATAACGCAAAAACTAATACACATTTAGACAGAAAGAGGACCATATCAGGTCAGAGGAATtgatttcctgtgtgtgtgtgtgttttacgcACAAGGTTTTGTTTAGGCTATCTAAAGATTTGCAATATTATTACAGTTGCTTTTTAGATGAGTTGAAATGTGATTATTCAGAAAATAGCTGTGTTGTCATGGCATTGCTGTGAAGGGGTTTGGAACCTTTTGGATTTATTATGCTGCAGACCTGTTGGTGCCGTTGTTGTCATTCGGATATACGCATACACGGCATGCGTCAGCCTACTCTAATAATTGTTGACACTTTGTGCATTGCACTTGTCTATTTGCATGATGTGTATATTTGGCGTTTGTGTTGTTTCCGTTTTGTTTCTTATATTGGCTGCGTGTTATtgtttgtgtattgtatgtTGCAAATAGAGTGGTGGCACAATTGTGTTTGGCCTAAAGCGGCAGTAAAGAACGCACCGGCCTGGGAAGAACGAAATTGAGACTCACAAGACAAGTTGAAAGAGGAAAAGGGATATAAGGCAGATTATGAACTGAAGAGAAGGAATGGAAGTGAAGAATGGAGAatgtcctctctgtctgtctgtctgtctgtctgtctgtctgtctggctggcAGTAGTTCAGACAGAAATGGATCCCTCCCCTCACCTACATTAACTCATATTAGTGTCATGCTTGTAATTTACAATGTGTTGTGTTGTCCATGGTACTGTGTATGTTTGATCATTACAGTGAGCCTGTAGGTACTCTTTAGACATCATTATTTAAGCTCTAATGTATTAAGAGTGCAGAAGGACATTTTAACTTTGTATAAACAATTTAATGAGTCATATAAAACTCATTTCTATTCAAAACAAACAAGTTACCATGGGAGTTCTTACTAACTTATTGCCGAGAAATCACCGTATATAACAAATCTTAATTAGCACCACATTCAAACATTTCATTCttgggttaaaaaaagaaggaaacaaATCAAATGTAAACCATCACAATGTGGCACTTTCTCAGTAGGGTCTTTACCCTGTAACAAGCTTCACAAATGTAAGCGCTCCTGACAATTCAATTTCTCTGAACAAAATCACACCCTTTCTGAATTCTTATGAACCTCGACACATCAGCTATAAATATTATCAACTTAAGTGTCCTGTATGAAGCCACACTCAAACTGAAGAAGGGAATTGTGCACATCTATGTGGTTTTTCAGTTGGCACAGAGGAAGCAGTGACTCATTATGATATATGTCCATATTAAAAGCGGGTGACACATGTATGGATGGATATATGAAGTGTCCACATAAAGTCTGTTTATACAATCAGAGCCAATCATCCTGTTTATTTACTGGAACAACCTGCAGTTAAACTATGTTCAGCAgttcagtcatacagtaggtgcAAGGTATTTTCATTTGCAACAGGTGTAACGTGTTATTTTCTATTCCTTTAAGAGCTACTCTACTAACCTCTGCAGCTGTATGTGTGAGCGGTCTGCTGTCTTGTGAAAAGAATGGTGTTGCCATGTCATGTAATCCATCGATCAAATGTCAGTCTGGTTCGGGCTTTGGACTTCATCTCATTACATTACCTCATCCCATTCACTCCCTGGTTCGTGCAATCCTTTCCTTCCATAAGAAACCGACTGCAGCTTCAGTTTCAACACCTCCTTGTCTTTCTAAATCACAGTCTATGGCACGTGTGTCAATAAACGACACCAGAAAAAGCCTCTTCCTATGTTTGTAGTGTAAAGCACAGATTATCTGAGAGTTGAACGACTGAAAGTATCCATCAGATAGCGAATGGTGAGAATATTTCTAGATAATATAACTGCATCTTTATCAGAGTCTAACTCCTGGGTTCAGCTAGTTGCCGTGTCCTGAGGCCGCCTTGGTCTTTTCCTCTGTGTCTTCACATCTTCTACACAGTCTGGAAGGCCTTGGTTTGGGCAGGGATCATGACAGGTGTGGCCCCCATGCGGTTCAGGTTTCCAGGACTCAGCTTAGGGGGAGGGCTGGGCTTGCAGTTGGAGGTAGACGTGGAGGTTGGTGCTGAGCGTGGTTCTGGAGTCTTGGGAACGGTCTGATTGTAGCCAGGTGGAGactgagggaaggaggaagCTTGGCCGTTTTCCTTGAGGGCTGCCACAGCAGGAACACATGCTCGTGGGCCTCGGAGCCCCATGTTGTGCACCATGGACTGAGTGGAGGAGGTGCCTGAGCGAGAGCTGCCAGAGCGGGACGACGAGAGGGAGTTGGGTTTCACCAGTTTGGCCTTGGGAGCCTCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232050 lncRNA upstream 12154 36090575 ~ 36090808 (+) True G171200
TU232049 lncRNA upstream 12447 36090217 ~ 36090515 (+) True G171199
TU232044 lncRNA upstream 23015 36079693 ~ 36079947 (+) True G171194
TU232024 lncRNA upstream 91770 36009433 ~ 36011192 (+) True G171177
TU232020 lncRNA upstream 112769 35987644 ~ 35990193 (+) True G171174
TU232057 lncRNA downstream 6875 36116627 ~ 36116956 (+) True G171207
TU232066 lncRNA downstream 172249 36282001 ~ 36282221 (+) True G171215
TU232067 lncRNA downstream 203225 36312977 ~ 36313199 (+) True G171216
TU232108 lncRNA downstream 305593 36415345 ~ 36415805 (+) True G171248
TU232154 lncRNA downstream 702461 36812213 ~ 36812462 (+) True G171284
XM_039826485.1 mRNA upstream 131169 35968403 ~ 35971793 (+) True LOC120575655
XM_039776757.1 mRNA upstream 325337 35775979 ~ 35777625 (+) True LOC120543618
XM_039776756.1 mRNA upstream 399878 35700064 ~ 35703084 (+) True LOC120543616
XM_039826476.1 mRNA upstream 434490 35659716 ~ 35668472 (+) True LOC120575650
XM_039826475.1 mRNA downstream 207091 36316843 ~ 36325638 (+) True LOC120575649
XM_039776763.1 mRNA downstream 294662 36404414 ~ 36406390 (+) True LOC120543623
XM_039826379.1 mRNA downstream 1078057 37187809 ~ 37223409 (+) True LOC120575584
XM_039776717.1 mRNA downstream 1568849 37678601 ~ 37695632 (+) False LOC120543587
XM_039776716.1 mRNA downstream 1572179 37681931 ~ 37695632 (+) False LOC120543587
unassigned_transcript_962 other upstream 478350 35624541 ~ 35624612 (+) True trnaw-cca_23
unassigned_transcript_961 other upstream 479296 35623595 ~ 35623666 (+) True trnaw-cca_22
unassigned_transcript_960 other upstream 481188 35621703 ~ 35621774 (+) True trnaw-cca_21
unassigned_transcript_959 other upstream 482137 35620754 ~ 35620825 (+) True trnaw-cca_20
unassigned_transcript_958 other upstream 483092 35619799 ~ 35619870 (+) True trnaw-cca_19
TU232287 other downstream 1152164 37261916 ~ 37262336 (+) True G171409
TU232385 other downstream 1433848 37543600 ~ 37613796 (+) False G171468
TU232389 other downstream 1433848 37543600 ~ 37601804 (+) True G171468
TU232416 other downstream 1496278 37606030 ~ 37616661 (+) True G171483
TU232382 other downstream 1557469 37667221 ~ 37669599 (+) False G171468

Expression Profile