RNA id: TU232050


Basic Information

Item Value
RNA id TU232050
length 234
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G171200
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 36090575 ~ 36090808 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTTGCTAAACTAATGGGCAGCACTAATTGGACAGACGTGCTGTGacgtgccgacgtgtaaggtgagcgtattgtgtcacttccggtgttcccgtgttacaaacgctagtttgctgctccggcaaaaacttactgaactctgcttcactgtttaaattagcagctatttgcctggattgcatttgaattacaattgttttactcaagcacttatacttagcttcacttacagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232049 lncRNA upstream 60 36090217 ~ 36090515 (+) True G171199
TU232044 lncRNA upstream 10628 36079693 ~ 36079947 (+) True G171194
TU232024 lncRNA upstream 79383 36009433 ~ 36011192 (+) True G171177
TU232020 lncRNA upstream 100382 35987644 ~ 35990193 (+) True G171174
TU232017 lncRNA upstream 114139 35973248 ~ 35976436 (+) True G171171
TU232056 lncRNA downstream 12154 36102962 ~ 36109752 (+) True G171206
TU232057 lncRNA downstream 25819 36116627 ~ 36116956 (+) True G171207
TU232066 lncRNA downstream 191193 36282001 ~ 36282221 (+) True G171215
TU232067 lncRNA downstream 222169 36312977 ~ 36313199 (+) True G171216
TU232108 lncRNA downstream 324537 36415345 ~ 36415805 (+) True G171248
XM_039826485.1 mRNA upstream 118782 35968403 ~ 35971793 (+) True LOC120575655
XM_039776757.1 mRNA upstream 312950 35775979 ~ 35777625 (+) True LOC120543618
XM_039776756.1 mRNA upstream 387491 35700064 ~ 35703084 (+) True LOC120543616
XM_039826476.1 mRNA upstream 422103 35659716 ~ 35668472 (+) True LOC120575650
XM_039826475.1 mRNA downstream 226035 36316843 ~ 36325638 (+) True LOC120575649
XM_039776763.1 mRNA downstream 313606 36404414 ~ 36406390 (+) True LOC120543623
XM_039826379.1 mRNA downstream 1097001 37187809 ~ 37223409 (+) True LOC120575584
XM_039776717.1 mRNA downstream 1587793 37678601 ~ 37695632 (+) False LOC120543587
XM_039776716.1 mRNA downstream 1591123 37681931 ~ 37695632 (+) False LOC120543587
unassigned_transcript_962 other upstream 465963 35624541 ~ 35624612 (+) True trnaw-cca_23
unassigned_transcript_961 other upstream 466909 35623595 ~ 35623666 (+) True trnaw-cca_22
unassigned_transcript_960 other upstream 468801 35621703 ~ 35621774 (+) True trnaw-cca_21
unassigned_transcript_959 other upstream 469750 35620754 ~ 35620825 (+) True trnaw-cca_20
unassigned_transcript_958 other upstream 470705 35619799 ~ 35619870 (+) True trnaw-cca_19
TU232287 other downstream 1171108 37261916 ~ 37262336 (+) True G171409
TU232385 other downstream 1452792 37543600 ~ 37613796 (+) False G171468
TU232389 other downstream 1452792 37543600 ~ 37601804 (+) True G171468
TU232416 other downstream 1515222 37606030 ~ 37616661 (+) True G171483
TU232382 other downstream 1576413 37667221 ~ 37669599 (+) False G171468

Expression Profile