RNA id: TU232017


Basic Information

Item Value
RNA id TU232017
length 2936
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G171171
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 35973248 ~ 35976436 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTAATACAACAGCATTATGGGACAACTAAGGCTAGTCCAACTAGTTATTTTAAACTCTTGTTAATGTACTGAATCTGtatttaaactagggctgtcaaaataatGTGGTGACCTCTaactcacccagtaagagcgtgcgccccatgaaggctgaggcctttgcagtggcccgggttcaaatccgacctgtggcACTCTCTGCGTGTCATCCCGCATCTCtttcccacctttcctgtctatccactgaaataaagaggaaaaaagcccccaaatatatatatatatatatatatacactgatTAATGGTGCTCTGAGACATGCTTTGATGCAGTGTGTAAAAATGATGGAGGCAGATGAGAAAACGTAGCTCTCCTACTGAATGGACTATTTACATCCAAAAAGGCCCCGATGGAACCGTGGATAGGAGCACTGTTCTTTGCAGTTTGTGCAGCAAAGGAATTTTCGTACCATCGGAGTAATTCAAGCTAGAAGTAATGAATTAATAAGCTCGGAGGTCAGCTCAGCCACTGATGCTAATGGTAGCATTAGCAAAGTTCAGACAAAACTTAATTCCTATTCCTCACATACAGTAATACAGACAGTACAACGTAATAAAATTCAATAACTTGACATAACTTTGCGTCCTCCAACACAACGTATAAGACGGCATCCAGAAGCACAATCAGGTCTAAAACTCAGAAAAGACTGCAAAAGCTGATGTATTGGCGAAGGTTGAAAATATTGTAAGTAAgaaagtaaagtttatttatatagcacttttcacagataaaaatcacagtgCTGTGGCTGGTTAGCTTAGTTGGTAGAGCACTATGTAGAGTTTTATTTCTcaatgcagaaggtccagggttcaaatctgatcCGTGATggttttcctgcgtgtcttccccctctctctccccttaggACAGCTCATGTCTGAGCTGTCCTATCATTAAAGGGGACCACTAACTACATCTGACCTGCTGACGCCAGACACCGGGAAGAAGTGTGACGCTGTATCAGGTCAGACATATAAGAAGGAGCTTGTACGTGCAAGGCTCTAAAAGTAAGGACcagaattttaaaatgaattctaAAAcgaactggtaaccagtgaagtaATTCCAAAACAGGCGTGATGTGGCGCTCTTTTGCTTGTGTGAGTTGAAAGCCTCGCAGCAGACGGAAAAGCTCTTTTCTGTTCAAACGTGTAAAAAGACTGTTACAATAATCTAAACGAGacaagataaaagcatggatgaTCATTTCCAATTCAACCTTCGACACCAAAGTTGAGAGTTTTGATCTGTTCCTCAGTCGAAAGTAGCAGTTTCTAATGAACTGTTTGGAATGATGCTCCAAGGACATTgcagaatcaaaaacaacacctaAATTCCTTAGGCTCGGTTGGACAGACGGGCCTAAAGCACCAATATGCTGCTTAATCAACGGGATGCTACTTTCTGGGGCGATAATTACTGTTTCCGTCTTATCTGGGTTCAGCAGCAATTAGTTGTCACTTAACCACCGCTTGATGCTAGTCAAGCAATTTATCAACGACGACAGTTTATAGAGCTTAGTAGCCATAACACATCAGGCTTTTTCACTGGTCAATTTTTAGATTTTGGGCTATTTGTCTtcaataacatgtcttctttcatacttgtggtgaaaaaaagtccaaaatacACATGTAGGTCTtcattttactacactttgtctagTTGCGtcggtagatttctcctaaattcaacaaaagttggtGTTCTAAATCATCCCGCTGCTCCGTAATCGCTGTCTGTACCCTGTCATCACAcataccgttggaaagctctctctctcttgtgtaaTGTTgtcggatccaaatatggtcatttcctttttataaGCAACCAATCCAGAAAGTACAATGGGGTATTTAACTCTAAATGTGAAATCTCATTGGCTTATCTcaatttctgacaacgtgattcgTTAAGATTTGTCACGTGACATACTCTGACATTTCCGCAGGAgttaaaaatgttgaaagagTGATTTgaagaggtttactcctcgacgcagcggccacaggtttgactccaacctgtggccctttgctgcatgtcattcccccctctctctcccctttcatgtcttcatctgtcctgtggaattaaaggcctaaaatgcccaggCCTAAATTGTTTGTACGTAAACTGCCATTCAGAAAACAGTAGTGttcagacagcggaggtaatGAGAGCGCCACCCAGCAGTGGCTGATAGTTCAGGTAGcgtgtctgaatgaactgatcGGTGGTTTAATTTGTCCTAATTGCGCAGGGACAGGGCTTAAAGTTAACAATGATCCGAAGAATCATGGGTTCTGTAGTAGTTTACTACTAGAGTGCAGTCTTTGCAAAGAAGATACGTACAGGCAAAGTGTCTACACATCCACGTGTCTTCAAGACGATGCAGTGTTTGATGTGAATGTGCGAATGGTGCTGTTAGCGCACGAGTTAGGCTTAGGATATGCAGCTCTCAAAAAAATCTGCAAAGTGTTGGGGATTCCTGGCCTTCATGTTAAAACGTATCAGAGACACCAAAGGACAGTAACAGGTATGGAaacactctctctttctgtctctgtcccctctcctaggagaacttccagcttcttttctggtgttaacattgggaagttttatttttttggctatttttccaaggtgtaaatctcttagtgttgggtgaccatattttgatttccaaaaaagaggacactcaGCCCTGCCTTGAGACAAATCCGACAGGCTTCTCAaaggttaatgaacatgctttattatgcctcaatggtgcaaaaataacttctgtaataaaataaaatgtgtaacaacctgtaacaaaataatagctctctttttaaataaataaatgaataatatgaaa

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231959 lncRNA upstream 251904 35721136 ~ 35721344 (+) True G171121
TU231925 lncRNA upstream 362068 35610898 ~ 35611180 (+) True G171088
XR_005642039.1 lncRNA upstream 413982 35558376 ~ 35559266 (+) True LOC120575670
XR_005642030.1 lncRNA upstream 439187 35529788 ~ 35534061 (+) True LOC120575663
TU231877 lncRNA upstream 470772 35497967 ~ 35502476 (+) True G171049
TU232020 lncRNA downstream 11208 35987644 ~ 35990193 (+) True G171174
TU232024 lncRNA downstream 32997 36009433 ~ 36011192 (+) True G171177
TU232044 lncRNA downstream 103257 36079693 ~ 36079947 (+) True G171194
TU232049 lncRNA downstream 113781 36090217 ~ 36090515 (+) True G171199
TU232050 lncRNA downstream 114139 36090575 ~ 36090808 (+) True G171200
XM_039826485.1 mRNA upstream 1455 35968403 ~ 35971793 (+) True LOC120575655
XM_039776757.1 mRNA upstream 195623 35775979 ~ 35777625 (+) True LOC120543618
XM_039776756.1 mRNA upstream 270164 35700064 ~ 35703084 (+) True LOC120543616
XM_039826476.1 mRNA upstream 304776 35659716 ~ 35668472 (+) True LOC120575650
XM_039826478.1 mRNA upstream 304776 35663399 ~ 35668472 (+) False LOC120575650
XM_039826475.1 mRNA downstream 340407 36316843 ~ 36325638 (+) True LOC120575649
XM_039776763.1 mRNA downstream 427978 36404414 ~ 36406390 (+) True LOC120543623
XM_039826379.1 mRNA downstream 1211373 37187809 ~ 37223409 (+) True LOC120575584
XM_039776717.1 mRNA downstream 1702165 37678601 ~ 37695632 (+) False LOC120543587
XM_039776716.1 mRNA downstream 1705495 37681931 ~ 37695632 (+) False LOC120543587
unassigned_transcript_962 other upstream 348636 35624541 ~ 35624612 (+) True trnaw-cca_23
unassigned_transcript_961 other upstream 349582 35623595 ~ 35623666 (+) True trnaw-cca_22
unassigned_transcript_960 other upstream 351474 35621703 ~ 35621774 (+) True trnaw-cca_21
unassigned_transcript_959 other upstream 352423 35620754 ~ 35620825 (+) True trnaw-cca_20
unassigned_transcript_958 other upstream 353378 35619799 ~ 35619870 (+) True trnaw-cca_19
TU232287 other downstream 1285480 37261916 ~ 37262336 (+) True G171409
TU232385 other downstream 1567164 37543600 ~ 37613796 (+) False G171468
TU232389 other downstream 1567164 37543600 ~ 37601804 (+) True G171468
TU232416 other downstream 1629594 37606030 ~ 37616661 (+) True G171483
TU232382 other downstream 1690785 37667221 ~ 37669599 (+) False G171468

Expression Profile