RNA id: XM_039826462.1


Basic Information

Item Value
RNA id XM_039826462.1
length 4132
RNA type mRNA
GC content 0.55
exon number 15
gene id amot
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 35354289 ~ 35494261 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cTCCTCGATATTCCTTTTTCATCTTTTCATGTTCATTACTGTGAGATGGGCCTCAAAACTAACACAATAGCCTGATAAACAAACGGACTCGCGTCGTATTTGTCAGATATAAGCTATTCTTAAAAGACAAAGTTAACCTACTGAAATTTGACCATAAAAAACTCGATTTCATATTTAGTATGTTTGTGCTTTACTTTGTGCTTGAACTTATGGTTTAGCCTTGTATTTGTTAGGCCACTTTTAAAGGCTCGTCTGTTACGCATCtgttgaataataataataaaattagatTTCTTCGATTAAACAGGACGTTGGAGCAGGGAAATCCTTCAGTTTCCATTACCAGGAGAAGGGCGACGAGGAGGGGGAGGCTGGACATTCTTCTCATACTGCAGAGCAGGCAGGGGGGAGCTTCCTGCCACTACTCCTGTACCGCTTCTTTTTTACGGTTAAACATGAAATTCACAGGAAAGGACGAAGACTTTGTGGACGCGAACAAGCTTCTTGGACTTCTCCCGGAGCAGGAATTCAAACTCGCGGCGAGACCAACCATTGACCGGCGGCAGCCAGTTTTATTGTTGTAAAGGGAGATTTTCTGCAGCCCGAGGAACCGCTTCAGCCCCGCAGGAAAGGAGAAACATAACAAAAAGTGATGTTTCGCTGAGTTGGAGTACCGGGAAAGTAAACGGAAGAAACTCCAGTGAAAGAGAAATGCTGACCAGTGCCTCTACATCTTAGAGCTCCTTGATGACTTGCTGAGCCTGCAGGGAGGCCAGAACCAGGTGTTAAACTACCGGACACCACCAGGCTACCACCACCTATCACCAGCCCAActccaccacaacaacaacatcagccCTATCTTTGTGCTTTCCCTCAGCGAGCCCCACCTGGGTCTCCCGGTAGTCCTGCCGCAGCATCAAAACATGAGCAGCTGTTGCCACTGACGCCGCCAGGAGAACACAGTGAGAGCAACCATCCAGCCAAGCTGTACTTTCTCCGTCCCGCTCCAACTGAATCCAAATTTCAGATGTTTCGGAAAAAAGCATCTTCCTCCTTGAGAATGAGAAGAATAACAGAAAACGCTAGATGGAGTATTGACCGTGGGCGAAGCTTGTCTTTCCATGAGGTGCGTGGCCAGTGTGAGGCAGAGATGAGGGCCGCAGCCGAGGAGACGTCCACCAGCAGCAACAGTGTAGGAGGTGGCGGCAGCACCGTCCTGCAGCGCCTGCTGCAGGAGAAAATGAACCGTAATTACGTGctccaacagcagcaacaacaacaaggaaGTGGAGGGGTTTTTTCCGGACAGGGACATATATGCCCCTCTGATGATCACTCCATGACCCCCCACATTGCCCGGCAGGAGCCCCAAGGACAGGAGCTGCAGACGGACAATGGCCTGGAGAAGCTGGGCTCCACCAGAGTAGGAGGAGGCAGTGGAGGGGTAGGGGGTTTAGGGactggaggtggaggaggaggcaaCACTGGAGGTGCTGGGAGCAGCCAAGGGCAGTGCCCGAACCCCGAGGACCTCCCTACGTACGAAGAAGCCAAGGTGCAGTCACAATACTTCCGTGGCCATGGTCCTCCTCCTCAGGCTCAGCAGCAGAACAGCCAGCCCCAGCAGCCTCCTCTCCCTGGCTCAGTGGGCACTGCCTTCTACGTTACTGGGGTGACCAGTGCCAAGGTGCGTACTGAGGGTCGCCCCACGGTGCAGCGAGTGAGCGGCACAGGGAGAGTGCACCAGGATGATGGTCTAAAGGATCTGAAGCAAGGACACGTTCGCTCTCTCAGCGAACGACTTATGCAGCTGTCCCTGGCCACCAGTGGCGTGAAGGCCCATGCTCCTGTCACCAGCGCCCCACTCTCACCCCAACTGCCCCCACCAGGGCCACCAGGCGACTACTACAAGTCGCAGCACCGGGGCCCGCCTCCAGACTACCCATTCAAAGGACTGGGCTCGCCTACCAAGCAACAGGAGCCTGGAGACCATTTTTACCAagagcagagagggagggagctcTCGAGGGAGGTGCCCCATGTCCGATACCAGCCCCCACCTGAGTATGGCTCATTCAGGTCCAGTAAGGAGGGTTCGGTCCACTTCCAGAGGCCCCTTCATCAGCACAGTCCCACCTCCTCTGTCACATCTATGGGATCCTTGTCCCGCACCCAGTCCTCAACCCTAAGCAGCATGCTCAGCGTCTCCCATCCGTCCTTCCCTCACCAGCACCCACAGAGTCAGGGTGAGCCCTTTCCTAGCATGGGTCCCCGCAGTACGCAGGGTCCCTACCAGCCAGGGGCGCCCTTCACCCTGGGGCCTATTCACCCACCACCAAGAGGTCACATTTTCCCTCATGACCCCTATGGCTCCACTTCAAGGATGCACCATCAGCAGCACCATCAGtatcaacaacaacagcagcagcagcagcagcagcagttccaAGAACCTCCCCAGCCCCAACCGCCAGTACAGGCTGGACATTTTCCCCATCCGCACTCCTACTCCCAACTGCAGGGGGAGCCTTTTGCTATGATGGTGCGCGCGAACCAGATGGTGGATGTGCTAACGGAGGAGAACAGGATGCTAAGGCAGGAGATGGAGGCTTGCCGTGAGAAAGTCACCAAGTTGCACAAGTTGGAAACAGAGATCCAGCTGGTGTCAGAGGCATATGAAAACCTTGCCAAGTCCTCCTCTAAGAGGGAGGCCCTGGAGAAAACCATGAGGAACAAGCTGGAGCTGGAGGTGCGCCGGCTGCACGACTTCAACAGGGATCTCCGAGAACGAATGGAGACGGCCAATAAGCAGCTAGCTGCTAAAGAGTGTGACGGCTCAGAGGACAACCGCAAAACCATCTCACAGCTGCTTGCACAGAACAAAGAGACGCTCCGTGAGAAAGAGAAGCTGGAGATGGAGTTTAACGCGCTGCGCTCCACCACTGAGGACCAAAGGAGACACATTGAGATCAGAGACCAGGCACTCAATAACGCCCAAGCCAAAGTGGTCAAGCTGGAAGAGGAGcTGAAGAAGAAGCAGGTTTACGTTGAGAAGGTGGAGAGGATGCAGCAGGCTCTAGCTCAGCTTCAGGCAGCCTGTGAGAAGAGAGAACAACTCGAGCATCGACTCCGTACTAGACTGGAGAGAGAGCTGGAGTCACTACGCATGCAGCAGCGTCAGGGAGGCACTcaaagcagtggtgtagtccCATCAGAGTACAACGCCACAGCGCTGATGGAGCACctgagggagaaggaggagcgGATCCTGGCTCTGGAGGCCGACATGACCAAATGGGAGCAGAAGTATTTGGAGGAGAGCGTGATGAGGCAATTTGCCCTGGACGCCGCTGCCTCTGTCGCCACTCAGAGGGATACATCTGCAGCAGTGATAAGCCACTCTCCCAGCAGCAGCTACGACACATCAGTGGAGGCTCGAATTcagaaggaagaagaggagattCTCATGGCCAATCGGCGCTGTCTGGACATGGAAAGCAGGATAAAGAATCTCCATGCCCAGATCATAGAGAAAGATGCTATGATCAAGGTGCTTCACCAGCGCTCCAGGAAGGAGCCCATCAAGCCTGATACGCCATCTGCTATGAGGCCCTCCAAGTCACTTATGTCTATTTCCAACACTGGCTCCAGCGGTTCAGGACTACTCTCTCACAGCCTGGGGCTCAGTAGCTCGCCCATCACCGAAGAACGCAAGGACACCAGTTGGAAGGGCAGCCTGGGGGTTCTGCTGGGTTCTGAATTTCGCACAGAGTCTCTCAGGACAGAGTCAATCTCATCATCCCCCTCACCGGTGCTTTCTTCCACCCCAATGACCACAGGCCACTCAAAGACAGGCAGCAGGGACAGCTGCACACAGACTGAGAAGGGACAGAGTCAGGACACCAGCAAGCCCAGCACTCCAGCGCTGCAGAGCATGACGCTGCCCGCTCGCCTGTCCAGCCCCAGCCCAGTCTACATTCCGGACCGCATAGCAGATGTGCCAATTTTTCACAGCAGCACCCTGGAGCGGAGGCTCCCCGTCCAGTCCCACCCACAGCAACAAGCCCCTCCTCCAGCCCACCCAACCCAACAGGACGTGGACAACGATATGGTGGAGATCCTCATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231833 lncRNA upstream 11678 35342407 ~ 35342611 (+) True G171011
TU231824 lncRNA upstream 25342 35328562 ~ 35328947 (+) False LOC120575657
TU231823 lncRNA upstream 28281 35325602 ~ 35326008 (+) True G171001
TU231820 lncRNA upstream 30078 35323878 ~ 35324211 (+) False LOC120575668
TU231819 lncRNA upstream 30522 35323433 ~ 35323767 (+) False LOC120575668
TU231880 lncRNA downstream 647 35494684 ~ 35496930 (+) False G171049
TU231878 lncRNA downstream 824 35494861 ~ 35497782 (+) False G171049
TU231879 lncRNA downstream 3077 35497114 ~ 35498129 (+) False G171049
TU231877 lncRNA downstream 3930 35497967 ~ 35502476 (+) True G171049
XR_005642030.1 lncRNA downstream 35751 35529788 ~ 35534061 (+) True LOC120575663
XM_039778187.1 mRNA upstream 53782 35291315 ~ 35300507 (+) True zgc:171929
XM_039826409.1 mRNA upstream 262341 35088135 ~ 35091948 (+) True LOC120575608
XM_039826408.1 mRNA upstream 267107 35083895 ~ 35087182 (+) True LOC120575607
XM_039776754.1 mRNA upstream 270463 35083122 ~ 35083826 (+) True LOC120543613
XM_039776752.1 mRNA upstream 275501 35073812 ~ 35078788 (+) True LOC120543612
XM_039776755.1 mRNA downstream 109826 35603863 ~ 35610586 (+) True LOC120543615
XM_039826476.1 mRNA downstream 165679 35659716 ~ 35668472 (+) True LOC120575650
XM_039826478.1 mRNA downstream 169362 35663399 ~ 35668472 (+) False LOC120575650
XM_039776756.1 mRNA downstream 206027 35700064 ~ 35703084 (+) True LOC120543616
XM_039776757.1 mRNA downstream 281942 35775979 ~ 35777625 (+) True LOC120543618
TU231818 other upstream 30998 35322260 ~ 35323291 (+) False LOC120575668
TU231692 other upstream 266392 35083889 ~ 35087897 (+) False LOC120575607
TU231682 other upstream 313918 35039942 ~ 35040371 (+) True G170896
TU231480 other upstream 912139 34436960 ~ 34442150 (+) True G170775
TU231434 other upstream 1017941 34332414 ~ 34336348 (+) True G170735
unassigned_transcript_958 other downstream 125762 35619799 ~ 35619870 (+) True trnaw-cca_19
unassigned_transcript_959 other downstream 126717 35620754 ~ 35620825 (+) True trnaw-cca_20
unassigned_transcript_960 other downstream 127666 35621703 ~ 35621774 (+) True trnaw-cca_21
unassigned_transcript_961 other downstream 129558 35623595 ~ 35623666 (+) True trnaw-cca_22
unassigned_transcript_962 other downstream 130504 35624541 ~ 35624612 (+) True trnaw-cca_23

Expression Profile