RNA id: XM_039826409.1


Basic Information

Item Value
RNA id XM_039826409.1
length 3297
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC120575608
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 35088135 ~ 35091948 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACGCATTAGTGGAGAGAGGGAACAACTCAATGAGATGAAGATTAGTACTGACATGGAAAGACGAATGTTCgagaaagaaaaggacagaATGGAAGGAGAAAGGTCTGAGGTGAAAATGAGAGAAGATCAACTCTTGAATGAATTGAAATCCCTAGAATATCTGAGGGAAAAGCTGCAACAGCTTGATGAAAGGATGAGTGAAGAcgtgaaaaacaaaatcatgaGACTGGAGCAAAACAATGAAGACTTATTAAAACTGTTGAGTGTTTTGGGGCAAAAGCATGAGGCTCTGGATAAACTGAAGGAAAATATGTCATCTTACACTGAGATAttacaaagagaaagagaaggtttGAAGAGTACGATGTCAGAAATTGTCATGCAGAGACAAGAAATGGCCAATCAACACAGACAAGAGGCTGAGTTGGAAAAGACACATCTTATAGAACTAAAGGCAGAGCAGAAGCAAGACAGAGAGGATCTGGATAGAAAGAGTGAAATGATGAACAAGGAGAAACTGGACTTGGAGCTGATGAGGTCTGACATTCTGAAACAAAGTGACATATTAGAACAAGTGATACAAGATATAGAAGAGGGAAAAGACAAACTGGAAATCACAAAGACTGAGCTACAAAAGCAGAAAGAACATGCAGACAGTCAGTTTGATAAGATAAaccaagaaaaacaacaattgtATCAAATAAAGACAACTACtgaaagtgagagagaaaggtttttaaatgaaaataagagGATGGAAGGAGAACTGTCCGAGCTGAAAATTACAAAGGTCCGGCTCACCAGGTTAATGAACTTCATGGTAAGTCTCAGCGCAAAACTCAAAGAGTTGAATCAAAGGAGACATGAGGACTTTAGAAAGAATATGGACAAATTTGGACAGAAATATAAAGACATGCTCCAATCGAACTCAGTATTGGAACATAAGTGTGATGAACTtgataaacagaaaaataagGTCACTGGTTATTATGACCTGATgcaaaaagagaagaaacatATGGTGACAATAATGCTTGACAAAGCGGTACAAAGTGAGGTTGTAAAGGAATGGCTTCAGGAGCAAGATGTTGATGAACAGTATTTTAATAAACCTAAAGAGTTTGAATGTGAGAAGGGTGTCTTCCAGTCAGATGCCATGATCCAGACggaagaatttgaacatcagtGGAAGTTAGAGGGAGATATACATGATCTTGAAAGAAAACCTAAATACTTGAAAACTAAGGGGGGAGGTCTGCTGCTGATGGTGGCGGAAGATGAAGGGAAAAATAAACAGAAGATGTTCAAGTTGGCTCCTGAGCCAGATGATTTTACAGACGAGAAAATGTCAAGAAGAGATTGTTTGCGAAAGATCTGGAAGGATACTAAAATGGAGCGGAAGGAGATCAATCAGATGAAGTGCATGAGCCATGAGATGAAAAACAACATAGAGAAAAGACTAAAGGTGATCAATCAGTTTGTTAAGAGAACATGGttacagaaagaaaaggaaCTACTGGAGAATAAGCTGAAACAAGGACTAAGTAAGGACATGACATCCCAAATTGACTGCGAGAGAGACAGCATAACACTGGATAAAAAATACAGAGAGATCCAACAACTTCAAGTTCAGATGCTTAGTGAGAAAGAAAAACTGTGTACACTGACAAGTATTGATAAAGCTAATCAAACATTCAAGGTCGATATAACCACAAGGGATGGAACAATGCATGTAAAACAACAGACTTCTGCTAAAATGTATCAAGAGAAGATGAAGGTAGAAGAAACTGATGCAGCTCCAGAGACATCCAGCGGACTCCTTTGTCAACTCCGGCATTTTTGCTATCGATGCTGCTGCCCTTGCTGTCCCTGCTGCAAGCAAGTCTGAAAGACAGAAAGTTGCAGAAAGATTCTACAGGAACAATTGTAATGAGGGGCGTCTGCCCTAAGCAGCAGTGAGATGAATCCCCccatggagtccagacactggtggagGTTGTGGCTGATGATTCTGATGAGGCTGATTGGCTGAAGAGGCTGATGAACCTGTTAAGACTGGCGATGCCAACAACAGAGACAACATATTGAAATAACTGAACAGCCGTGAACACAGCATGCTCATAACAGCAGCATAAACGTACTAAAGGCATGGAGAGAATCATATTTAAACAGATGCAGCAGCAGAATGATAGGCTAACAATGTAGGTGTGTCGGTAAGTAAGCATGCATGGGAGGAGTGCATGAGAGGAGTGAATGACAGGATGCACAAAAGATAAAACCTTGCAACAGGATAGTGTTCCTGACTGAAATTATGCTATAGCTTCAAGCTTCATTTATTGGTTAACAAAATAAGATTTGATAGTTTACTTAAATAACTTTAAGAGTGAGTGCATTATTTGTAGTTTGcatattgcattttattttacaaacaacttacaaaaaatacattttacagcatGAACATATCCGCCCTTTTATCATTACCACCCACCcaaacaaaaatcaagaaaagatgacacagtaactacaatatgcagacaaaataacaaaaaaaacaattaactaTTAAgcaaataaacatgtttaaatgagCCATTAAACATGTCTCTCCCCAGTACAAAGCTTCTTAGGCGCCCTGCAGAAGGCtcaggtactttccccattttctagtgCAGACATCCAACCTGGCAAACCATTTGTATGACATTTTGTTAAACGCAGCCACCCTAGctatctcacaagcccactcttgGATTGACAGCTATCATTACTAGTTTGGACtcagcttcttatgtgcttatccatcctGTTTAGGACTGacaaataatcttgggctgaatggaacctgggtccctgcaatccAACATAGATTATGTATCCCAGTCCAAATTTCCTGGACCTTATGACAGGAAcataggacatgaagtaattggccgtcctttgtcttacatttccaactattttgtgtgtctttcataCCAAGTCTAAACAATCTGGAAGGAGTCCAATAGAAGCAATGTATAATCTTGAAGTCACATCGCGTGACGTAGTTTTAAAATTCCTACTGTTTCTGTCCCACTCCTCATCATCCAGTGTAATATTCAGATCCCTTTCCCAAGTCTTCTTGAGGGCTGACCAGGCTCCATCCCCTAGGTTCTGCATAAGCATAGAATAATACCCAGAAGCCTCATGACCTTTTCCATATTTCAACACCTTATCTAAACATTCTGGTGCCTTCGGGGCTGAATAACTGGATCCAAAAATCCCCACCAACAGATGGAGAAGTTGCAAATATC

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231649 lncRNA upstream 161881 34921306 ~ 34926254 (+) True G170866
TU231648 lncRNA upstream 169037 34917893 ~ 34919098 (+) True G170865
TU231631 lncRNA upstream 304946 34782950 ~ 34783189 (+) True G170852
TU231630 lncRNA upstream 312358 34775331 ~ 34775777 (+) True G170851
TU231628 lncRNA upstream 318650 34769264 ~ 34769485 (+) True G170849
TU231711 lncRNA downstream 5530 35097478 ~ 35098788 (+) True G170911
TU231714 lncRNA downstream 8948 35100896 ~ 35101325 (+) True G170914
TU231725 lncRNA downstream 41253 35133201 ~ 35133493 (+) True G170925
TU231730 lncRNA downstream 45290 35137238 ~ 35137810 (+) True G170929
TU231731 lncRNA downstream 46601 35138549 ~ 35140429 (+) True G170930
XM_039826408.1 mRNA upstream 953 35083895 ~ 35087182 (+) True LOC120575607
XM_039776754.1 mRNA upstream 4309 35083122 ~ 35083826 (+) True LOC120543613
XM_039776752.1 mRNA upstream 9347 35073812 ~ 35078788 (+) True LOC120543612
XM_039776751.1 mRNA upstream 14682 35052442 ~ 35073453 (+) True LOC120543611
XM_039776862.1 mRNA upstream 170766 34836230 ~ 34917369 (+) False alcama
XM_039778187.1 mRNA downstream 199367 35291315 ~ 35300507 (+) True zgc:171929
XM_039826463.1 mRNA downstream 262341 35354289 ~ 35494037 (+) False amot
XM_039826462.1 mRNA downstream 262341 35354289 ~ 35494037 (+) False amot
XM_039826469.1 mRNA downstream 262341 35354289 ~ 35494037 (+) False amot
XM_039826468.1 mRNA downstream 262341 35354289 ~ 35494037 (+) False amot
TU231692 other upstream 238 35083889 ~ 35087897 (+) False LOC120575607
TU231682 other upstream 47764 35039942 ~ 35040371 (+) True G170896
TU231480 other upstream 645985 34436960 ~ 34442150 (+) True G170775
TU231434 other upstream 751787 34332414 ~ 34336348 (+) True G170735
XR_005636585.1 other upstream 1735806 33352264 ~ 33352329 (+) True LOC120544785
TU231818 other downstream 230312 35322260 ~ 35323291 (+) False LOC120575668
unassigned_transcript_958 other downstream 527851 35619799 ~ 35619870 (+) True trnaw-cca_19
unassigned_transcript_959 other downstream 528806 35620754 ~ 35620825 (+) True trnaw-cca_20
unassigned_transcript_960 other downstream 529755 35621703 ~ 35621774 (+) True trnaw-cca_21
unassigned_transcript_961 other downstream 531647 35623595 ~ 35623666 (+) True trnaw-cca_22

Expression Profile