RNA id: TU231833


Basic Information

Item Value
RNA id TU231833
length 205
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G171011
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 35342407 ~ 35342611 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCCAGTAAGCACACATACGTCGCGGCGACGTATTGGCGATGTAATCAGAATGCATCGGGGATACGTAGTATTTTGGTAGTTTGCTCACTGGCACGACGTCCCCGCGACGTCGCTCCGCTACGTTTCAGCGACATATAGCCGCTCTCTCCGCgacgtatacatatatacatcgtTCTAACGTATGCCATACGTCGTAGAGATGTA

Function

GO: NA

KEGG:

id description
ko05016 Huntington disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231824 lncRNA upstream 13460 35328562 ~ 35328947 (+) False LOC120575657
XR_005642023.1 lncRNA upstream 13578 35320610 ~ 35328829 (+) True LOC120575657
TU231823 lncRNA upstream 16399 35325602 ~ 35326008 (+) True G171001
XR_005642037.1 lncRNA upstream 18155 35322782 ~ 35324252 (+) True LOC120575668
TU231820 lncRNA upstream 18196 35323878 ~ 35324211 (+) False LOC120575668
TU231880 lncRNA downstream 152073 35494684 ~ 35496930 (+) False G171049
TU231878 lncRNA downstream 152250 35494861 ~ 35497782 (+) False G171049
TU231879 lncRNA downstream 154503 35497114 ~ 35498129 (+) False G171049
TU231877 lncRNA downstream 155356 35497967 ~ 35502476 (+) True G171049
XR_005642030.1 lncRNA downstream 187177 35529788 ~ 35534061 (+) True LOC120575663
XM_039778187.1 mRNA upstream 41900 35291315 ~ 35300507 (+) True zgc:171929
XM_039826409.1 mRNA upstream 250459 35088135 ~ 35091948 (+) True LOC120575608
XM_039826408.1 mRNA upstream 255225 35083895 ~ 35087182 (+) True LOC120575607
XM_039776754.1 mRNA upstream 258581 35083122 ~ 35083826 (+) True LOC120543613
XM_039776752.1 mRNA upstream 263619 35073812 ~ 35078788 (+) True LOC120543612
XM_039826463.1 mRNA downstream 11678 35354289 ~ 35494037 (+) False amot
XM_039826462.1 mRNA downstream 11678 35354289 ~ 35494037 (+) False amot
XM_039826469.1 mRNA downstream 11678 35354289 ~ 35494037 (+) False amot
XM_039826468.1 mRNA downstream 11678 35354289 ~ 35494037 (+) False amot
XM_039826467.1 mRNA downstream 11678 35354289 ~ 35494037 (+) False amot
TU231818 other upstream 19116 35322260 ~ 35323291 (+) False LOC120575668
TU231692 other upstream 254510 35083889 ~ 35087897 (+) False LOC120575607
TU231682 other upstream 302036 35039942 ~ 35040371 (+) True G170896
TU231480 other upstream 900257 34436960 ~ 34442150 (+) True G170775
TU231434 other upstream 1006059 34332414 ~ 34336348 (+) True G170735
unassigned_transcript_958 other downstream 277188 35619799 ~ 35619870 (+) True trnaw-cca_19
unassigned_transcript_959 other downstream 278143 35620754 ~ 35620825 (+) True trnaw-cca_20
unassigned_transcript_960 other downstream 279092 35621703 ~ 35621774 (+) True trnaw-cca_21
unassigned_transcript_961 other downstream 280984 35623595 ~ 35623666 (+) True trnaw-cca_22
unassigned_transcript_962 other downstream 281930 35624541 ~ 35624612 (+) True trnaw-cca_23

Expression Profile