RNA id: TU232414


Basic Information

Item Value
RNA id TU232414
length 691
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G171482
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 37551704 ~ 37608845 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctttcttctttctgtcctctttcttctttcctctttctgtcctctttcttctttcctctttctgtcctctttcctctttctgtcctctcgctctctgttctctttactctttctgtcctctttctgtcctctttcctctttatttcctctttctgtcctctcgctctctgttctctttcccctttctgtCCTCACGCTTTCTTTCTgacctctcgctctctgttctctttcctctttctgtcctctcgctctctttctgtcctgttctctttcctctttctgtcatctttcctctttctatcctctgttctctttcctctttcttctttcctctttctgtcatcTTACCTCTTTCtatcctctgttctctttcctctttcttctttcctctttctgtcctctttcttctttcctctttctgtcctctcgctctctgttctctttcctctttctgtcctctcgctctctttctgtcctgttctctttcctctttctgtcctctttcctctttctatcctctgttctctttcctctttcttctttcctctttctgtcctctttcttctttcctctttcttctttcctctttctgtcctctcgctccctgttCATTTTCCTCTTTCTGGCCTCTTTCCTCTTGCTGTCTtctgtcctcttctttcctccttctgtcctctttcttctttcctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232419 lncRNA upstream 21831 37571598 ~ 37572576 (+) True G171485
TU232403 lncRNA upstream 40279 37545360 ~ 37554128 (+) True G171479
TU232398 lncRNA upstream 61077 37532472 ~ 37533330 (+) True G171474
TU232368 lncRNA upstream 74703 37517878 ~ 37519704 (+) True G171464
TU232347 lncRNA upstream 226198 37321163 ~ 37368209 (+) True G171446
TU232383 lncRNA downstream 5264 37611964 ~ 37613796 (+) False G171468
TU232552 lncRNA downstream 64553 37671253 ~ 37671518 (+) True G171558
XR_005636511.1 lncRNA downstream 88967 37695667 ~ 37696001 (+) True LOC120544520
XR_005636361.1 lncRNA downstream 90961 37697661 ~ 37698412 (+) True LOC120543547
XR_005636362.1 lncRNA downstream 91708 37698408 ~ 37699562 (+) True LOC120543548
XM_039826379.1 mRNA upstream 370998 37187809 ~ 37223409 (+) True LOC120575584
XM_039776763.1 mRNA upstream 1188017 36404414 ~ 36406390 (+) True LOC120543623
XM_039826475.1 mRNA upstream 1268769 36316843 ~ 36325638 (+) True LOC120575649
XM_039826485.1 mRNA upstream 1622614 35968403 ~ 35971793 (+) True LOC120575655
XM_039776757.1 mRNA upstream 1816782 35775979 ~ 35777625 (+) True LOC120543618
XM_039776717.1 mRNA downstream 71901 37678601 ~ 37695632 (+) False LOC120543587
XM_039776716.1 mRNA downstream 75231 37681931 ~ 37695632 (+) False LOC120543587
XM_039776715.1 mRNA downstream 82412 37689112 ~ 37695632 (+) True LOC120543587
XM_039776718.1 mRNA downstream 82412 37689112 ~ 37695632 (+) False LOC120543587
XM_039776649.1 mRNA downstream 90316 37697016 ~ 37697394 (+) True LOC120543545
TU232287 other upstream 332071 37261916 ~ 37262336 (+) True G171409
unassigned_transcript_962 other upstream 1969795 35624541 ~ 35624612 (+) True trnaw-cca_23
unassigned_transcript_961 other upstream 1970741 35623595 ~ 35623666 (+) True trnaw-cca_22
unassigned_transcript_960 other upstream 1972633 35621703 ~ 35621774 (+) True trnaw-cca_21
unassigned_transcript_959 other upstream 1973582 35620754 ~ 35620825 (+) True trnaw-cca_20
TU232382 other downstream 60521 37667221 ~ 37669599 (+) False G171468
TU232573 other downstream 97983 37704683 ~ 37705579 (+) False G171572

Expression Profile