RNA id: XM_039776748.1



Basic Information


Item Value
RNA id XM_039776748.1
length 1266
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC120543607
representative True

Chromosome Information


Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 30859601 ~ 30875760 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CGGAAGATGCAGCGCTTCTTTGGTTTGCTTCCAAGTGGAGAGCTGACCAATGAGACTCTGGCAGTTATGAAGAGGCCGCGCTGTGGTCTGTCAGACGTGGAACCATTTGGAGAGACAATTCGCTGGAAGAAGAGCACCCTCAGCTACAGGATCGCTAGCTACAACCTCCCTATCCCAACCTCGAAGGTTAACAAAGTCTTCAGAGCAGCGTGGAAGCTCTGGTCCAATGTTGCACCAATAAAATTTCGCAAGCGGAGCAGGAAGGAGGCTGATATTGTCATCTCCTTTCACAGTGGCGACCATGAGGACGGCTCACCTTTTGATGGCACAGGAGGAATCCTGGCTCATGCCTTTCCGCCTGGGTTTGGTATTGGTGGAGACGTGCACTTTGATGCCGATGAAGACTGGAGCcttaagtcaagtcaagtcaagtcaaGTTTCAACCTATTTGCTGTAGCAGTCCATGAATTTGGCCATGCGCTTGGCCTGCCCCACTCATCTGACCCTGGAGCTATCATGTACCCAACATACAACTTTGCCCCCAATTATGAACTTCAGCTCTCCTTCCGCGATGTGAAAGATGTCCAACACCTGTATGGTATCAGTCCCAATTTTGCTTCACTATTCTCAAAACAACCTCCTCCAAGAACACCTGACAAATGTGATCCAGATTTGTCCTTTGATGCGGTAACAGAATTACAACAGGAGGTCCTGTTTTTCAAAGATAGATTTATGTGGCGCAAACATCCACAGTTTGATGAAATTGGAATCACCCTGAGTAGCAGTCTGTGGCAAGACACAGTACCTCCCTACTTGGATGCTGTCTATGAGAATGTGGAGAGGAATGTTAACGTGTTTTTCAAAGgTCATCAATACTGGGTGCTGAGGCAGTTCAATCTTGAGGAGGGTTTTCCAAGAAACATCTCAGACTTGGGCTTCCCCTCCAGAATAAAATCTGTAGATGCTGCTCTTCACTTCAGAAATGAGCATTACACTGTGTTCTTCACTGGCCATGAGTGTTGGAGGTACAATGAGCAGCAGAAGACGTTGGAGGGATCACCGACACTTATAGAGCAGCAGTGGCCGGGGATTCCAACTCCCATAGATGCGGCTGTCTTCTATGAGGGGGTTGTCCACCTCTTTAAGGGAAACATCCACTACAAATTCGACTCCAACTCCAAACATGTCTTGTCCACCGGCCCTGCTAATGAGCTGCTGGAATGCAAGAAGAATGACGACAATGAAATACTGACAGGGAGGAGATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005636409.1 lncRNA downstream 67725 30788469 ~ 30791876 (-) True LOC120543896
TU230604 lncRNA downstream 127519 30720942 ~ 30732082 (-) False LOC120575604
TU230607 lncRNA downstream 127713 30729002 ~ 30731888 (-) True G170054
TU230479 lncRNA downstream 407095 30450547 ~ 30452506 (-) True G169956
TU230457 lncRNA downstream 430545 30428848 ~ 30429056 (-) True G169941
TU230632 lncRNA upstream 12246 30888006 ~ 30889451 (-) False G170078
TU230633 lncRNA upstream 12246 30888006 ~ 30889575 (-) True G170078
TU230641 lncRNA upstream 37942 30913702 ~ 30914239 (-) True G170085
TU230657 lncRNA upstream 61146 30936906 ~ 30937273 (-) True G170092
TU230687 lncRNA upstream 146144 31021904 ~ 31022240 (-) True G170106
XM_039777251.1 mRNA downstream 2381 30853556 ~ 30857220 (-) True LOC120543889
XM_039777258.1 mRNA downstream 8547 30846998 ~ 30851054 (-) True LOC120543892
XM_039777254.1 mRNA downstream 29292 30752071 ~ 30830309 (-) False LOC120543890
XM_039777252.1 mRNA downstream 29292 30763992 ~ 30830309 (-) False LOC120543890
XM_039777256.1 mRNA downstream 29292 30826922 ~ 30830309 (-) True LOC120543890
XM_039778152.1 mRNA upstream 14732 30890492 ~ 30901561 (-) True acer3
XM_039778679.1 mRNA upstream 27871 30903631 ~ 30910364 (-) True serpinh1a
XM_039777993.1 mRNA upstream 90871 30966631 ~ 30988577 (-) False samsn1b
XM_039777996.1 mRNA upstream 90871 30966631 ~ 30984938 (-) False samsn1b
XM_039777995.1 mRNA upstream 90871 30966631 ~ 30984938 (-) False samsn1b
TU230602 other downstream 8588 30849319 ~ 30851013 (-) False LOC120543892
TU230603 other downstream 29658 30829067 ~ 30829943 (-) False LOC120543890
TU230595 other downstream 120334 30738055 ~ 30739267 (-) False LOC120543890
TU230450 other downstream 444908 30411251 ~ 30414693 (-) False si:ch73-1a9.3
TU230433 other downstream 549014 30306849 ~ 30310587 (-) False LOC120543993
TU230664 other upstream 81741 30957501 ~ 30958498 (-) True G170098
TU231114 other upstream 1325949 32201709 ~ 32202206 (-) True G170463
TU231185 other upstream 1567526 32443286 ~ 32491305 (-) True LOC120543978
XR_005636561.1 other upstream 3403542 34279302 ~ 34279394 (-) True LOC120544758
XR_005636560.1 other upstream 3405165 34280925 ~ 34281017 (-) True LOC120544757

Expression Profile