RNA id: TU231185


Basic Information

Item Value
RNA id TU231185
length 2417
RNA type TUCP
GC content 0.51
exon number 8
gene id LOC120543978
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 32443286 ~ 32491305 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGCCACTAGGCGGAGACATTGACCAGTGAACGGCAAAGTGAACTCTAAACTAACATTAAGTTTTTCTAATTGAAATATGTGGCTCCAGATGACCTCTTCTGTCATCAGTCTGCACCTGCTACATATTATTGGAGTGCCAGCCAGGAGGGACTGAAGGAACAGAAGAGTGTCCCAGTCCTTACTTCGAACCCAGTCCAGAAATTCCAGATCAGCGTGATTAAGTCCAAAGAGGAAAACATGGAGCAGCTCCAGGATGAAGTCAGCTCAGTGCTGTGGTCAATGGGAAAGCCTGAACTCATAAAGGGCGTCATCAACTAAAGTGTAGTGAACCATCAGGGGAAGGATTCCAAGGCTTATCCTGTTGTGCCCCGAGTCGTCTGGCATCAGATGGAGCTTTTCTAGTTGAAATATGTGGCACCAGATGACCTCTTCTGTCACCAATCTGCACCCTGCTACACCAGCAACTCGTACTGGAACATTCATTAGCAGATAACGCAAACAAGGCAGAATCGATGCAACCCTCCTCCGCCCCATTCATCTCCCGTTGTCATCATTCCCGGCTCCCAGGGTTCCTCCTCCATCAGAAGCCCAGCTTCACATCCCATCCATCCAGATCTTTGGGCTTCCTTTATCCCCctaccagtgtctagactctaTCGAGGGGATATCAACGGCTTCTATACCCCTTATAAATTAACATtgcgatggagtctaatcgccAAAGACTAACATTTCAAACTATTATGCACCATGTTCATTAAACTTAtttcactctgaaataaagtctctcctgattgaattagcTCTACTGTTCATATTGCATCTGCATCATTAATATTACTTTAGCAATGCACCCTCAGGTACCCAGCAGTCCCCACATAAAACGCTGCTGCATTGCATGGAGGGAAAATCCATTAAGTTGTTTCCCTGTTACAGGACAGGACTGGGCTGTTACTGTATGAGAACGACTGGTCACTTTAGGATCTTTCCTGGAAGACACTTACAGGCTAATGGGCCTAAGATCCATTATGCTAACAGTCAGAAGGAGGGAAGTGGGAGAGTTGTCAGACTCTGTATGCTTTCACCATATTCTAATTTAACTCAATGAAAACCACAGTGCACATAGGCACGCCATTTTCTTAGTAAATCAGGTGGTGTGCCGAGTTTTGCATCCAGGTTGCGGGCAGCAACAATAATTTCTGCCGAATAATGCAACCCCTTAACACTCAAAATCTTTAGTTTTCCCTTGGGGATGCAATTCTTGGCAGGGATGCAAAACTAGGCACATCACTGGCCCATTGTGGCCtaattagtctcgcattgtcagacacacagagagcgggaTGTAAGGGAGAATCCTGTGTCAaatatctctctcacacacacacacacacacacacacacacacacaaaaggtgtGTACAGAGCCTCTCACCTTGACAGGCATGCTCCCTGTCTTCTCCGTGTGGCCCGTGGAGGCTGTGTTCCCTACGTTCACAGGTGGCGTCGCCCCCCCCTGCAGGCTCAGGGCCTTGTCCCGGCGGCGGCGTTTGCTGCTGTCCCGTTGCTCCTTCTGCCTGTTCTGCACCTCCATCAGGGCCGTGATGAACGTGTTCTTCACCTCTTTCTCAAACTCTAGCTCCTCCCGCCGAGCCAGCTGGCTGACCAGCTCCTCTGAGTACTGGCGGATGGCCGCCTCCACCCGGTCCAGCAGCTCCACCAGAGCAGAGCTGGGCATCAGGCTCAGGCCTTCGTAGGAGCAGTTGTTGTTGGAGGCCTGCGACAGCTGCCTGATCTCCTCCAGCAGGGAGGGGTTGGTCATGGAGCAAGGGCTgctctcctcttcatcctcctcctcctcggttTCGCCAGGATCTGGAGAGTTCTCCATCATCTCGACTATCTCCTCAATGACctgatcaGCTGTGATGAGAGGCTCGTCCTTCAGGCAGTTGGCATTGTCATTCTTCTCATTCATCTCCTCGTCCTCTTTTTCGTGGATCTCCTGGTCAGAAAGATTGCCGTTGAGTCCCTCTGAGTCTGTGCCGTCCCAGGTGGAGATGTAGTTGTCAGTTAGAGCATCCCACACaTCTTCGTCCTGcagcctctcctcttcctcctcgctGTGGGACTGGTTGCGTATGGGCGCCAGGCCCTCCGTCTTGGTGTTGTAATTATGGAAGCAAACGTTGAGCTTCTCGTCAAACTCGTTGACCAGGTCCTCCATCGACTTGAAGCTCATCATCTCGGAGAAGTTCTCCAGCTCAGAGAAGTCCTCGCGGGTGATGGAGGCCAGGGGGGCGGTGGTAGTGGAGTAAGAGTGTTTGAGCACTGGGTGGTCCAGCTCATCCATGCGGCAGGGCCGGAGGTCCTCAAACTCCTCATCCAAACACACAAGAGGGGCTTCCATGGTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231177 lncRNA downstream 27085 32410272 ~ 32416201 (-) True G170523
TU231175 lncRNA downstream 37664 32405341 ~ 32405622 (-) True G170521
TU231174 lncRNA downstream 39838 32403214 ~ 32403448 (-) True G170520
TU231173 lncRNA downstream 43387 32396564 ~ 32399899 (-) True G170519
TU231172 lncRNA downstream 46774 32394989 ~ 32396512 (-) True G170518
TU231260 lncRNA upstream 92064 32583369 ~ 33013812 (-) True G170585
XR_005636523.1 lncRNA upstream 415053 32906358 ~ 32908784 (-) True LOC120544610
TU231305 lncRNA upstream 570177 33061482 ~ 33061700 (-) True G170626
TU231306 lncRNA upstream 601723 33093028 ~ 33093318 (-) True G170627
TU231358 lncRNA upstream 1009975 33501280 ~ 33505814 (-) True G170673
XM_039777962.1 mRNA downstream 299199 32099217 ~ 32144087 (-) True LOC120544316
XM_039777394.1 mRNA downstream 352845 32078976 ~ 32090441 (-) False vps26bl
XM_039777393.1 mRNA downstream 352845 32078976 ~ 32090441 (-) True vps26bl
XM_039777390.1 mRNA downstream 383309 31970880 ~ 32059977 (-) False LOC120543954
XM_039777929.1 mRNA upstream 1755 32493060 ~ 32567042 (-) True esama
XM_039778275.1 mRNA upstream 86792 32578097 ~ 32589328 (-) True LOC120544484
XM_039777947.1 mRNA upstream 338010 32829315 ~ 32868069 (-) False robo4
XM_039777944.1 mRNA upstream 338010 32829315 ~ 32868069 (-) False robo4
XM_039777946.1 mRNA upstream 338010 32829315 ~ 32868069 (-) False robo4
TU231114 other downstream 241080 32201709 ~ 32202206 (-) True G170463
TU230664 other downstream 1484788 30957501 ~ 30958498 (-) True G170098
TU230602 other downstream 1592273 30849319 ~ 30851013 (-) False LOC120543892
TU230603 other downstream 1613343 30829067 ~ 30829943 (-) False LOC120543890
TU230595 other downstream 1704019 30738055 ~ 30739267 (-) False LOC120543890
XR_005636561.1 other upstream 1787997 34279302 ~ 34279394 (-) True LOC120544758
XR_005636560.1 other upstream 1789620 34280925 ~ 34281017 (-) True LOC120544757
TU231512 other upstream 1817689 34308994 ~ 34309714 (-) True G170802
XR_005636548.1 other upstream 3246688 35737993 ~ 35738183 (-) True LOC120544743
XR_005636576.1 other upstream 3247164 35738469 ~ 35738586 (-) True LOC120544776

Expression Profile