RNA id: XM_039777390.1



Basic Information


Item Value
RNA id XM_039777390.1
length 764
RNA type mRNA
GC content 0.55
exon number 6
gene id LOC120543954
representative False

Chromosome Information


Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 31970880 ~ 32064710 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TCAGGATTAGCCGTATCTTAACGGACAGACGGTACAAGTAGTTGTCTCTGCTTACGGCTGATGCAAATCTTGGAGGCTGCAGCACATTTGTCTCTCGAGTTAAGCTGTCGCATTGGAGTCCGGGCCGAGGGGTTGGATCAGCAGACAAGTAAATCGTGAGAGAGGAAGAGGCCGAGAAAATGCAGCAATCCAGGTCCCAGAAGTGAAGAGGACCTACTAAGAGAAGCAGACGGTGCTGCTCATTGCAGTGAGTCAGTATCATGGAGGCAGGCAGCGGGGCTGCCGCAGCGGTGGGGAGTGCAGCACTAGGACTGCTGGGAGCCACAGCCACGTCCAGCCATGACATCTTGGACAGGGGACTGAGGCCTGGACGTCACCTGGAGGACGACGACATTGTGCCTGAACTGGCTAACATCCATCCCAGAGAGAGACCTGACTGGGAGGAGACCATCAGTGCCatgGCGAGGAGTGCAGAGATCCCTGAGCTGAGGACGGAGCCCCTCATGCGCtcatgcagcagcagcacggcCAGCATGAAGGTCAAGAATGTTAAGAAACTTTGCTTCACCAAGGGCCACTTCCCGAAACTGGCAGAGTGCGCTCACTTCCACTACGAAAACGTGGACTTTGGCACAATTCAGTTGTCCCTGGGGGACGAACAGTGTGAAGTGACGCGGAACGGCTATGAGTCCAAGGAGCTGGTGTACTTAGTTCATATTTACTGCCAGGTAAGACTCCACTGCGTTTGATGGTGCAGTAATACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU231072 lncRNA downstream 63894 31902012 ~ 31906986 (-) True G170425
TU231071 lncRNA downstream 69736 31900086 ~ 31901144 (-) True G170424
TU230966 lncRNA downstream 225196 31744851 ~ 31745684 (-) True G170332
TU230927 lncRNA downstream 380867 31579840 ~ 31590013 (-) False LOC120544288
XR_005636477.1 lncRNA downstream 394615 31566368 ~ 31576265 (-) True LOC120544288
TU231082 lncRNA upstream 15418 32075395 ~ 32078473 (-) True G170433
TU231101 lncRNA upstream 100671 32160648 ~ 32160862 (-) True G170451
TU231116 lncRNA upstream 165273 32225250 ~ 32225792 (-) True G170465
TU231166 lncRNA upstream 329740 32389717 ~ 32389988 (-) True G170512
TU231167 lncRNA upstream 330436 32390413 ~ 32391086 (-) True G170513
XM_039777387.1 mRNA downstream 3238 31917787 ~ 31967642 (-) False arhgap32b
XM_039777386.1 mRNA downstream 3238 31917787 ~ 31967642 (-) False arhgap32b
XM_039777385.1 mRNA downstream 3238 31917787 ~ 31967642 (-) False arhgap32b
XM_039777384.1 mRNA downstream 3238 31917787 ~ 31967642 (-) True arhgap32b
XM_039777388.1 mRNA downstream 22443 31917787 ~ 31948437 (-) False arhgap32b
XM_039777394.1 mRNA upstream 18999 32078976 ~ 32090441 (-) False vps26bl
XM_039777393.1 mRNA upstream 18999 32078976 ~ 32090441 (-) True vps26bl
XM_039777962.1 mRNA upstream 39240 32099217 ~ 32144087 (-) True LOC120544316
XM_039777929.1 mRNA upstream 433083 32493060 ~ 32567042 (-) True esama
XM_039778275.1 mRNA upstream 518120 32578097 ~ 32589328 (-) True LOC120544484
TU230664 other downstream 1012382 30957501 ~ 30958498 (-) True G170098
TU230602 other downstream 1119867 30849319 ~ 30851013 (-) False LOC120543892
TU230603 other downstream 1140937 30829067 ~ 30829943 (-) False LOC120543890
TU230595 other downstream 1231613 30738055 ~ 30739267 (-) False LOC120543890
TU230450 other downstream 1556187 30411251 ~ 30414693 (-) False si:ch73-1a9.3
TU231114 other upstream 141732 32201709 ~ 32202206 (-) True G170463
TU231185 other upstream 383309 32443286 ~ 32491305 (-) True LOC120543978
XR_005636561.1 other upstream 2219325 34279302 ~ 34279394 (-) True LOC120544758
XR_005636560.1 other upstream 2220948 34280925 ~ 34281017 (-) True LOC120544757
TU231512 other upstream 2249017 34308994 ~ 34309714 (-) True G170802

Expression Profile