RNA id: XM_039777394.1


Basic Information

Item Value
RNA id XM_039777394.1
length 1541
RNA type mRNA
GC content 0.49
exon number 7
gene id vps26bl
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 32078976 ~ 32090441 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTCAACCGGTTGTAACTCGAAATATTCAATAATCTAGGAAGCGTTGCGCTGGAGTCTGGACATTTTACAGCCAAAAAAAACGAGAAGAAAGTCCAGTGTGTTGTTTTCTAAGAAAAGGAGGATCCAGTGACCACTTGACTGACCAGCAGCTATGAGCTTCTTTGGTTTTGGTCAGAGTGCGGACATCGATATAGTTCTGAATGACGCCGAAACCAGAAAGAAAGCGGAGCATAAAAGCGAAGACGGCAGGAAGGACAAATATTTTCTCTTCTACGACGGCGAAACGGTGTCGGGGAAAGTCAACGTGACGCTCAAGTACCCTGGAAAGAGGCTGGAGCACAACGGCATCAAGATTGAGTTTGTTGGCCAGATAGAGCTGTACTACGACAGAGGAAACCACCACGAGTTTGTCTCTCTTGTGAAAGACTTGGCTCGGCCAGGGGAGCTCACACAGTCCCAGACGTTTGACTTTGAGTTCACACATGTGGAGAAGCCCTACGAGTCTTACACCGGTCAGAACGTCAAATTGCGcTACTTCCTGAGGGCGACAGTAGGCCGGAGACTGAATGACATCAGCAAAGAGCTGGACATTGTGGTGCACACGCTCAGCACCTACCCTGAGCTCAACTCCTCCATCAAGATGGAAGTGGGGATCGAGGACTGTCTACACATAGAGTTTGAGTACAATAAATCCAAGTATCACCTTAAAGACGTGATTGTTGGGAAGATTTACTTTCTGTTGGTGAGGATTAAGATCAAGCACATGGAGATCGACATCATCAAGCGGGAGACGACCGGCACCGGGCCAAACGTCTACCATGAGAACGACACCATGGCCAAGTATGAAATCATGGACGGTGCACCGGTCCGAGGGGAGTCCATCCCCATCAGGCTGTTTCTGGCAGGCTATGAGATGACGCCCACAATGAGGGACATTAACAAGAAGTTCTCAGTGCGGTACTACCTCAACCTGGTCCTCATAGACGAGGAGGAAAGGCGCTATTTCAAGCAGCAGGAGATCACCCTGTGGAGGAAAGGGGACATAGTGAGGAAGAGTATGTCTCACCAAGCGATCATCGCCTCCCAGCGCTTCGAAGGCTCCTCCAACCCAGAGAAGAGCCAGACCCCGAGCAATGCCGAAGAGGACAGCTAAAGCCCAGCATGCACTTCACCCCCTGTGTATGCTGTTTATAAACTGGACTCATGGCAGGGCTCGGGAGCGGAGTGAAAATCCGACTCCACTATCCCCGGGGATCACTTCAAATCTAATATGGACAGTATTCCACCCGCGTTTAGTGACAAAGGGAGTCCTGCCGGGACCGACTGTCCTGTGTGGTTAGTTAGCGTTGTGCCTAAGGGTTTATTGCCAAAATGTTTCAGTGCAATACTATAGAACTACTGCCACAGTGATATTCTCCGCCCTTTCTCCCCATTTAGACTGTGCTCATCTCTTAATCCACTACAGTCACCTAtcctggaataaaaaaaaaaaatgggttcACTGCTAAAAGGTTTTCAAATAATGGTATTGTGAAGAACA

Function

GO:

id name namespace
GO:0007034 vacuolar transport biological_process
GO:0030904 retromer complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231082 lncRNA downstream 503 32075395 ~ 32078473 (-) True G170433
TU231096 lncRNA downstream 57245 32021347 ~ 32021731 (-) True G170446
TU231094 lncRNA downstream 67136 32011473 ~ 32011840 (-) True G170444
TU231081 lncRNA downstream 78848 31963600 ~ 32000128 (-) True G170432
TU231072 lncRNA downstream 171990 31902012 ~ 31906986 (-) True G170425
TU231101 lncRNA upstream 70207 32160648 ~ 32160862 (-) True G170451
TU231116 lncRNA upstream 134809 32225250 ~ 32225792 (-) True G170465
TU231166 lncRNA upstream 299276 32389717 ~ 32389988 (-) True G170512
TU231167 lncRNA upstream 299972 32390413 ~ 32391086 (-) True G170513
TU231171 lncRNA upstream 304207 32394648 ~ 32394980 (-) True G170517
XM_039777389.1 mRNA downstream 14266 31970880 ~ 32064710 (-) True LOC120543954
XM_039777390.1 mRNA downstream 18999 31970880 ~ 32059977 (-) False LOC120543954
XM_039777391.1 mRNA downstream 65957 31970880 ~ 32013019 (-) False LOC120543954
XM_039777387.1 mRNA downstream 111334 31917787 ~ 31967642 (-) False arhgap32b
XM_039777386.1 mRNA downstream 111334 31917787 ~ 31967642 (-) False arhgap32b
XM_039777962.1 mRNA upstream 8776 32099217 ~ 32144087 (-) True LOC120544316
XM_039777929.1 mRNA upstream 402619 32493060 ~ 32567042 (-) True esama
XM_039778275.1 mRNA upstream 487656 32578097 ~ 32589328 (-) True LOC120544484
XM_039777947.1 mRNA upstream 738874 32829315 ~ 32868069 (-) False robo4
XM_039777944.1 mRNA upstream 738874 32829315 ~ 32868069 (-) False robo4
TU230664 other downstream 1120478 30957501 ~ 30958498 (-) True G170098
TU230602 other downstream 1227963 30849319 ~ 30851013 (-) False LOC120543892
TU230603 other downstream 1249033 30829067 ~ 30829943 (-) False LOC120543890
TU230595 other downstream 1339709 30738055 ~ 30739267 (-) False LOC120543890
TU230450 other downstream 1664283 30411251 ~ 30414693 (-) False si:ch73-1a9.3
TU231114 other upstream 111268 32201709 ~ 32202206 (-) True G170463
TU231185 other upstream 352845 32443286 ~ 32491305 (-) True LOC120543978
XR_005636561.1 other upstream 2188861 34279302 ~ 34279394 (-) True LOC120544758
XR_005636560.1 other upstream 2190484 34280925 ~ 34281017 (-) True LOC120544757
TU231512 other upstream 2218553 34308994 ~ 34309714 (-) True G170802

Expression Profile