RNA id: XM_039777833.1


Basic Information

Item Value
RNA id XM_039777833.1
length 3996
RNA type mRNA
GC content 0.52
exon number 24
gene id LOC120544216
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 31480312 ~ 31509416 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCGGGCCAgagactagctagctaggtacTGTTACTCCATTAGAACAGTTTGCTGCGCCTAAAAGAAGCTAAACACATCGGTTATCTGTATCGCCATCTGCTGACAGCTGGGTGGACCAGATGAAACAGGATGAATGCGCTGCTATTCCCCTGTCCTGTACATATGGGTGTTGTGACCACTGGAGGTGCACACGCTCAACTGCACAAATACACTTTGGAAAGAAATCTGACCAAGTTGGAGAAACTGCTGAATAAGGGTGTTGATGTGGACTGTGAGAATCACTTGGGTCAGACTCCACTGTTCTGTGCTGCTCTGTTGGGCCAAGTCAAGGTGATGGAGCTGCTCCTGCGTTACGGAGCTGATCCCAACCATCGTTGTGAGGACAGGAGCACCCCAGTTCATGCAGGTGTATTCTCCTGCAACCCTTCGGTGGTGAGTGGCTTGCTGGATGCTGGAGGAGATCTAAGACTCCATGATGTGGAAGGCAGGACACCCTTTGACTGGCTCAGGGCTGTGAAGCAGAAAGACAGTGACAAGATGCAAGAGTTCCTGGAGAGCTGCATGTCCTTCATGCAACAGCTGTGTCAGAGCCCAGCCGCGACGAAGCCCAACTCTAGCTCGTCCCACATGTCAACATCCATCTTGCTACACCCTGTATCTTTGCTGGATCGTCTAAAAGCACGTGGACATGACAAGCAGTTCAATAAGAGGACAAACAGCAAGTCTTCTGGTACAACAGCCCACTGTTTAGGTTTTGGAAAGCTGTGTGTTAACAAGCCCTGCCCGACAATGGCTGTGCCAGCATCTATTCCACTGATCAGAGACAGTGATCTGAGCCAGGCTGATGATGATGAACCTCTGCTCTCCTTCACATGTGGCTCTTTAACCTCCATGACCAaTTACAGCTGGAGGGGCTCCAGGGTGACAGTGAAAACCATGAGGGACAGTCAGACAGCCAATTTGGACCTGCTCCTCATAGAACAAGAGTACTGCAGccagCTGTTCCACCCACAGCTGCTGCAGCTGATGGCAGTGAGTGTGTCTGATGACCTCCAGAGGACCAGTCTGGTGTTTGAACCAGTCAACGTCGGCACGCTGCACAACCTGCTGCACAACAGGCGTACAGAGTTTCCAGTGCTACAGAACACGTGGCTGCTGTCAGTGATCTTGCAGGTCTGTGAAGGTCTGCAGTACATCCACAGGGGAGGCCTGGTGATGAGGGCCCTGTCTTCCCACAGTGTGGTCCTCACAAAGTTCACAGTAGCCAAACTAACTGATTTATGCTTCATGGTCCCCAGCGGTCAAAGTACATGTGTGAAACCCCCCATGCACACAGTCCTGCCCCCCAGCCTCTACAGATGGGCTGCTCCAGAGGTCATTAAACAGCGGCCGTGCACAACGCTAGCTGACGTCTACAGTCTGTGTGCTCTGATCCTGGAACTCTACACAGACAGAGAACCATGGGACACAGTGGACCTGAACGGAATCAAACAGGCGATGGATGCAGGATGGGCCCTGGCAGTAGACTGCAGCATTCCACAGCCTTACTATGATGTGGTCCTGAAAGGCCTGCAGCCGCACCCACGGGACCGCACGTGCAGCCTGCAGAGCCTGTGCTACACGCTACAACAGGACATCAAGagGTTCTCCCTGGAGGAACAGCTCAGTGGTGGTCAGTGTGCTTACCCAGAACAAGATCTGGGGCCATCTGAAGTCCAGACCACAGCAGAGCAAACCATAGTGGGGGAACCAGTACAGAGGGGTACTgagcacaacacacaaacatggacatTTGCCAGGCCACTCAAAGTCAAGGCAGACACAGTAGTGGCAAGACAGCTGTACAGAGGAGAAGAACCAAAGCTGGGGGGAGACAGAGATGAATGTATGGGGGGAGACACGATGCTCCATCAGGTGTACCCTTACAAAGACATGCTTCATCTGCTTGCTGATTTTGACTCAGTTAGTGTTGAGGAAGAACCTGAACCAGAGGCAGACATAGACAGGGAGCTAGTGGAGCAGCTGGATGGCCTGAAACTGATCTCAGATCAGCAGATCAGCACCATTGCGGTCAACCTCAAAGTGTCCCgggagctgctgcagcaggcCAACAGGAGCCTAGACACAGTGGAGAAACACCGCCAGCTGGACCACATAGGGTTAGACTCAGCAACCCGGCTCAGAGATGCTCCTTCTTATATCCACACCGACGCCTCTTGTGCCTCCTCCCTGTCTTCCTTCTCTATGTCCACCACAAATCTTTCAGGAGTTAGCGCTGCTGTTGGACCACGTTCAAAGCAGTACTGTCTCTTACCGAACAGTGGAGATCACTGGGGAAGGAACCTGGAGGCCCAGCTTCTGAGCAGAGATTGGGAGCTGCTGAGCCAGGAAGAGCTGGCTTTATGGCTGAGTCGCTATCCAGCTGAACAGCAGCAGTATGAGGAGGGCTGGTCGCCGCCTTGGCTTTCCTCAGGGTGCTACATGACGGAGAGCCCTTCAGTGGTAGTTGATCACAGCACAGAGGATCTGAGCCAGTACAGATCAGCTCTAGACAGCAGCCTTCTCAACATCGTCTCTGGGAAGAAGCAGCAGAAATCCCATTCACAAGAAAATGCAGACGTTACAATGGAGGTGTGCAGGCCAGCAGCTAGTGGGAGTCTACTGCTAGATACTCACAACACCAAATATGAGAGCTTTCCCAACAACTCTGAGAAAACGGACTCTGATCCTGAAATCAGTGGAACACAGGCTCAGTATACACCCAACACTAACACggctcACTTTGACATGGCTGGGCTGGCTGAACTCTCCAGCATCTCATACTCTCCAGCTCAGCCTCAGGAAAAACTTTACAGCATCTCATACTCTCCAGGTCAGCCTCAGGGGAAACTCTACAGTATCTCTGTGAGCGGACAAGCCCCACCCTGTAATAGTACCCCACGTAGCCCAGACGTACGCCGGCGTGTGATGACAGGAACGATTGAGGCCAATCTCGCGGACTCCCCTGTCTGCAGCCACCTCAGCTCTGTGCATCTCAGGACTGAGAGTTTCACCACACCAAGAGAAAGCTGGACTCCACCTTTCGACGCAGACCCAGCCAGCAGTCCCCAGGGCTTCATCACAGCCAGCCAGGAGGAAGAGCGGTCAGATACTATATCTCCCAGCTGCATTGGAGAGCACAAGCTAgaacaggaagaagaagaattagaagaagaagaagaagaagaagaagaagaagaagaggaaggagtgTCTGAACAGGAGCAGATTGAAGAGAGGCAGGAGGAAATGGATGGAACTAGTCAACCATCTGTGGAggcagaagaagaggagaacagGGCAGAAGACGAGCTTGAGGAAATGGAGGAAGGATTGCAGACGGTCAAAGGGTgcactgaagaagaaaaaaacatggacgaggaggagggaggaaggaatgTTGAAGAAGGCAGTGAGGAAGAAGAGCGTGGCTGCCGTGAcccacagagagATGTGGGGTCAGAAGTGGACGATGAAGAAGATATTGGTGACAGGAGGAAGGAAATAACAGGATTATTTGGCAATGGGGAAGAAACAGGGGGCCATGCCTTGGTTAAGATCAGTGAGCTTGTTGCCGACACAGTGTCTGCAGATCGGAAGGAAGAGCTCACGGTGTCTCTAGGGTCACAGCAAGGTCCCAGCTTATTGGAGGACACAAAAAGAGCCAATTCAACACTAGATGATGTGCTGCAGGGCTTTGTAGTGGAGGGCACCAGGAAGAGCCCAGGAACAAGTGGAAGGGTTGCCACATTGTGTCAGCTGTTTGAAGGTCAGACTGGTGATGATGAACACCCAGCAGGAGAGCATGCACACAGTCCGCTCCAGTGATGACTCAGCCTCCACCTGAAAACTCTCTCAACTGGAGGAGTGTGTCGGAGCAGCACCAGACTCTTCAGGAGTCAAATCAGCAAGGGAAACGTTCTTTAATGTTACTAGTGTGGCATTTACAGGGAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230822 lncRNA upstream 58647 31421308 ~ 31421665 (+) True G170214
TU230774 lncRNA upstream 154091 31325993 ~ 31326221 (+) True G170173
TU230748 lncRNA upstream 335177 31144879 ~ 31145135 (+) True G170155
TU230745 lncRNA upstream 336228 31143802 ~ 31144084 (+) True G170152
TU230739 lncRNA upstream 339416 31140433 ~ 31140896 (+) True G170146
TU230864 lncRNA downstream 22253 31531669 ~ 31535329 (+) True G170248
TU230886 lncRNA downstream 109041 31618457 ~ 31689108 (+) True G170266
TU230893 lncRNA downstream 122128 31631544 ~ 31633040 (+) True G170271
TU230904 lncRNA downstream 161774 31671190 ~ 31674136 (+) True G170282
TU230915 lncRNA downstream 192329 31701745 ~ 31703841 (+) True G170291
XM_039777900.1 mRNA upstream 60028 31389594 ~ 31420284 (+) True sim2
XM_039777269.1 mRNA upstream 347545 31093020 ~ 31132767 (+) False usp25
XM_039777922.1 mRNA downstream 43372 31552788 ~ 31597093 (+) True sptbn4a
XM_039777923.1 mRNA downstream 44077 31553493 ~ 31597093 (+) False sptbn4a
XM_039776960.1 mRNA downstream 93098 31602514 ~ 31611713 (+) True micu2
XM_039777068.1 mRNA downstream 186716 31696132 ~ 31701593 (+) True ckma
XM_039778348.1 mRNA downstream 392573 31901989 ~ 31906441 (+) True crx
TU230749 other upstream 262028 31185937 ~ 31218284 (+) True G170156
TU230294 other upstream 1351380 30128532 ~ 30128932 (+) True G169814
XR_005636422.1 other upstream 1368101 30011334 ~ 30112211 (+) False uvrag
TU230254 other upstream 1509205 29945874 ~ 29971107 (+) True G169789
unassigned_transcript_951 other upstream 4200591 27279649 ~ 27279721 (+) True trnav-aac_10
TU230881 other downstream 93111 31602527 ~ 31611684 (+) False micu2
TU230907 other downstream 168582 31677998 ~ 31680066 (+) True G170284
unassigned_transcript_952 other downstream 293415 31802831 ~ 31802912 (+) True trnas-gcu_8
unassigned_transcript_953 other downstream 295686 31805102 ~ 31805183 (+) True trnas-gcu_9
unassigned_transcript_954 other downstream 296226 31805642 ~ 31805723 (+) True trnas-gcu_10