RNA id: XM_039778454.1


Basic Information

Item Value
RNA id XM_039778454.1
length 4265
RNA type mRNA
GC content 0.50
exon number 13
gene id slc8a2a
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 31634936 ~ 31669195 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTCCGCGTGTGCTCGCAGCATCATCACCGTTAGTTAAACGGCATGGTGAGTTAACGGGAAAGTTCAGTCTGTGAGTTGAGCTGTGTGTCGAGACGGGGATACGGTAGTTTTACCGGGCGTGTGTTTCCAGACTTTCAGAAGCAATGGCAGCCTTTGGTGGAGCTGTGCCATAAAGCCGAAGGAGCGTCCTCTGACCCAGCGCACCCCCCAGTGACCCCCAGGCCCCCATCTCACTCAGGAATATCATGGGAGCCCCCCCAGTTCACCTTtccccactcctcctcctcctcctcctcctcctctccttcctcctcctggcCCAGCCCTGCACCTCCATCAGGCCCCAGGTTGTGGAGCGAGCGTCTGCCTCCGAGCAGCCTCAGTCCCTCGCTAACTCTACAGGGTCTGGCAAGCGGACATGTCCGGGCGTGGTGGTGTGTAGACCCGGTATCCTGCTGCCGGTCTGGTTGCCACTCAACCCTCCACTGGGGGAGCAGGCAGGGAGGGCTCTTGTCTACTTCATCTGTCTCATGTACATCTTCATGGGTATATCCATCATCGCAGATCGCTTCATGGCATCCATAGAAGTCATCACCTCTCAGGAGAAAGAGGTGACCATCACTAAACCCAACGGGGAAACAACAGTAACGACAGTAAGAGTCTGGAATGAGACTGTGTCCAACCTCACGCTCATGGCCCTGGGCTCCTCGGCGCCTGAGATCCTGCTCTCTGTTATTGAGGTGTGTGGGCACAACTTTGATGCAGGGGAGCTGGGCCCCAGCACCATAGTGGGCAGCGCAGCCTACAATATGTTTGTGATaattggtctgtgtgtgtgggtgatcccAAACGATGAGTCTCGCCACATCAAACACCTGAGAGTGTTTTTTATAACGGCTTTCTGGAGTATTTTTGCCTACATTTGGCTCTACCTCATACTGGCTGTCATCTCACCTGGGATTGTAGAGGTGTGGGAGGCCATAGTGACACTGCTTTATTTCCCGGTGTGTGTGATCTTGGCTTGGATCGCTGACCGTCGCCTACTCTTCTACAAATACATGCACAAGCGTTACCGTGCTGACAAGAGGCACGGCATTGTGGTTGAAATGGAAGGTGACCTCGAGGCCAAAGGCATTGACGTGATCATGGATAGAAAGTTGTCAGACGCCCGTTCGTGCCCTGGAAACTCCTCCAGTGTGACAGTCTCCGTGCAGACAGGCAATGAACTAGACCAGAACAACGATGAGGTGGTCCGCATCCTGAAAGACCTGAAGGAGAAACACCCAGACAAAGACCTGGACCAGCTGATTGAGATGGCCAACTACTCTTCCCTGGTCCACCAGAAGAAGAGCCGCGCCTTCTACCGTGTCCAGGCGACGCGCATGCTGATCGGTGCCGGCAACATATTGAAGAAACATGCTGCTGATCACTCACGCCGCTCAGCAGGCCAGGACTCTGACAAGGCCACGTGCTCGCACATTTGTTTTGAAAGTGCCCAGTACCAGTGCACAGAGAACTGCGGCTCTCTGAGCCTTGGGGTGATCCTCGAGGGAGGCACAGGCCAGGACACTTTCTATGTGGACTACTGTACAGAAAATGGCTCCGCCAATGCTGGGGAGGACTATGAATTCAGTAAGGGAACCCTGGTGTTTAAGCCAGGGGAGAGCCACAAAGAGATCAAGGTGGGCATCTTGGATGATGACGTCTTTGAGGAGGACGAGCACTTCTTTGTGCGTCTTCAGAACCTGAGGTTAGAAGAAGGTGGAAATGAAGGGGCAGGAACTCCCCCAAAGGGTCGGCTAGTGGAGCCACTGGTGGCCACCGTCACCATCTTGGACGATGACCACGCTGGCATCTTCACCTTTGGCCAGCGTGTGCTGCGGGTGAGTGAGAGCACAGGCACGCTGACggtgacagtggtgaggaacTCGGGCTCCAGGGGCACCGTCGCCGTGCCCTACCATACTGAGGATGGCAGTGCAAAGGCTGGGGTGGACTACGAGGAGGCCAGAGGGGAGCTGGAATTCACCAATGAAAAGACTAGTCAGACCTTACAGGTGCACATTATAAATGTGGAAGAGTACGAGAAGCAGGAAAACTTCTTCATTGTGCTAGAGGACCCCAAATGGCTGAAGAGAGGAATCTCGGCACTGCTGCTAAACCAGGGCAATCCCACCCCTGAGGAGGAAGAGGCCAGGAGGATCGCTGAGATGGGCAAACCCATTCTAGGAGAGCACAGCAGGCTAGAAGTCATCATAGAGGAGTCCTGTGAGTTTAAGAACACCGTGGACAAACTCCTGAAGCACACAAATCTGGCTGTAGTGCTCGGCACTCACTCGTGGAGGGAACAGTTCATTGAAGCAGTGACAGTCAGTGCAGGTAatggagatgaggaggagggacaggAGCAGCGAATGCCGAACTGCTTCGACTACTTTATGCACATAACGTGCATTTTCTGGAAGATTCTGTTTGCTTGCGTCCCACCCACAGAGTACTGGAATGGCTGGGCGTGCTTCATGGTGTCAATCTCTGTCATTGGTTTCTTAACAGCCATTGTTGGAGACCTAGCTTCCCATTTTGGCTGCACCGTCGGCCTGAGAGACACTGTCACTGCGGTGGTTTTTGTAGCACTGGGGACTTCACTACCTGATACCTTTGCCAGTAAAGTGGCTGCCACTCAGGACCAGTATGCAGATGCATGTGTGGGAAATGTGACAGGAAGCAACGCGGTTAATGTGTTTTTGGGCATCGGGGTGGCCTGGTCCGTGGCTGCCGTATATTGGCAAGTCAAAGGTAAGGTGTTTCGTGTTGACCCCGGCTCGCTGGCCTTCTCCGTCACACTCTTCACCATTTTTGCCTTCATCGCCATGGGAGTGCTGATGATACGCCGGAGGCCATCCATAGGCGGCGAACTGGGTGGCCCGCGGATCCCCAGAGTCCTCACTTCACTGTTTCTCTGTGGACTCTGGTTCCTCTACATCCTCTTCTCCAGCTTGGAGGCCTATTGCCATATACAGGGCTTCTGAGGGAGCACAGCTGGGGAGAGTAACGACTGcactaacaaacaaacacacatacccgGGACCGTTCACCTGTACAGTTCTGTTCCAGTAACTACCACTGGGAAGACATATCATCACTTTACAACTGCTGCCATGgttcataaaacacacacacacactacagactTCGCACATGCAAACCTGTACGTCACATCCACTGCAGGACAGTTCCAGTCAGCCCAATTTATTGTGACAGCACTGATTCATTTTCACGTAAGTGGACTAAATAACATGCAGTTTTTTGATAAAGGAGAGCAAAGCAGGAACGCATGTACTCTGTGAAGTCACTGGATTTTGCTTGATACTGGCTTAATGCCTGATGGCTCATAACCTGGATTTCAAGTTTGGTCTTATTTCTCCTCACGCTTATAGAGGCTGGGTCAGATTAGACTGCCTCAGCTAGTAATGAAATGATAAAAACGACAGCTGCTTTTACACAGATTTGCAATGTAGGGACACCTCTGAGTATATCATCACACTTATACCATGGCCGCTTGTCACAGGCAAAAACAGAAGCTGTGTTGAAACTTTCATCCAAGTTTGTCGTCAGTAAGCATTACCCCATAATTAGGTCTGTTTGACCAGTTAGAGGTCTGTCACGTAGCTCAAAGCAAAAGTGATGTTGCTATGGTtacctccattttttttttttgcgcacACATTTAGAACAGTAGTAATAAAACTGTTGACTGGAAGTGTTTGCGTTGTCTTGGTGTACAATTTTGGATGGAACTGCCAGCCAATTAGAGGTGTTTTCTGCGGCCGTGGTATAAAAAAAACGGAGCACAGTTGGGTTACAGTCCACAGTTTGGGAGATAAGCTGCTGTAGTATCTCACACTGATGAATTGTGTTTCGCTGTTAAATGATGTGACACGAGGCATTGTGtagtaaaatgtaatttaccTACTGAATTCAGTCgcactatataaatattgaTAATAGTATTGAAATGTATAATTGACAAAGAAGTACACAGGCAATGAATTTCTAATAAGCCgtggaatgaaaaaaaaaagtacctagTATCTGCCATTGAGTGTGATTGTGTAGAAGTGATGATTTATTCACCCCTGAAGtcttatctgtttatttattaatgatgtaatttaatgtctttgtaatataatgtatacaagCTGAtatgaacaaaaatatattgtaatttattGTAAGCTGTAATAATTACATTGACATTTTA

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0007154 cell communication biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005432 calcium molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230927 lncRNA downstream 45117 31579840 ~ 31590013 (-) False LOC120544288
XR_005636478.1 lncRNA downstream 45243 31566368 ~ 31589887 (-) False LOC120544288
XR_005636479.1 lncRNA downstream 54595 31566368 ~ 31580535 (-) False LOC120544288
XR_005636477.1 lncRNA downstream 58865 31566368 ~ 31576265 (-) True LOC120544288
TU230817 lncRNA downstream 252639 31382209 ~ 31382491 (-) True G170209
TU230966 lncRNA upstream 75657 31744851 ~ 31745684 (-) True G170332
TU231071 lncRNA upstream 230892 31900086 ~ 31901144 (-) True G170424
TU231072 lncRNA upstream 232818 31902012 ~ 31906986 (-) True G170425
TU231081 lncRNA upstream 294406 31963600 ~ 32000128 (-) True G170432
TU231094 lncRNA upstream 342279 32011473 ~ 32011840 (-) True G170444
XM_039776963.1 mRNA downstream 2050 31619707 ~ 31633080 (-) False hnrnpl
XM_039776962.1 mRNA downstream 2050 31619707 ~ 31633080 (-) True hnrnpl
XM_039776959.1 mRNA downstream 18482 31611775 ~ 31616648 (-) True LOC120543743
XM_039778449.1 mRNA downstream 92966 31531657 ~ 31542164 (-) True tiprl
XM_039778400.1 mRNA upstream 1985 31671179 ~ 31680058 (-) True nccrp1
XM_039777065.1 mRNA upstream 35815 31705009 ~ 31742252 (-) False mark4a
XM_039777064.1 mRNA upstream 35815 31705009 ~ 31742252 (-) True mark4a
XM_039777067.1 mRNA upstream 36501 31705695 ~ 31742252 (-) False mark4a
XM_039777066.1 mRNA upstream 36501 31705695 ~ 31742252 (-) False mark4a
TU230664 other downstream 676632 30957501 ~ 30958498 (-) True G170098
TU230602 other downstream 784117 30849319 ~ 30851013 (-) False LOC120543892
TU230603 other downstream 805187 30829067 ~ 30829943 (-) False LOC120543890
TU230595 other downstream 895863 30738055 ~ 30739267 (-) False LOC120543890
TU230450 other downstream 1220437 30411251 ~ 30414693 (-) False si:ch73-1a9.3
TU231114 other upstream 532515 32201709 ~ 32202206 (-) True G170463
TU231185 other upstream 774092 32443286 ~ 32491305 (-) True LOC120543978
XR_005636561.1 other upstream 2610108 34279302 ~ 34279394 (-) True LOC120544758
XR_005636560.1 other upstream 2611731 34280925 ~ 34281017 (-) True LOC120544757
TU231512 other upstream 2639800 34308994 ~ 34309714 (-) True G170802

Expression Profile