RNA id: XR_005636490.1


Basic Information

Item Value
RNA id XR_005636490.1
length 1066
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id LOC120544374
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 37258071 ~ 37259380 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCATACTTAAGCTCTGGGTCCTCTTGCGTCCGTGGTGCAGTTACGTTTGTTCAACAGTGTCTCCCTGTCACAAACCTGATCCTTCCTGTAACGGAACCGGGTTGAGTTTTGCTGCTGGCTCTGTGTAGCTGTACTATCGGCACTATTGGTGTATTGGTGCGAAGCTCCCTGACGGGGTTGTAAACCGCTTCGCTTGCGCTGGTATCTGCACTAGCCCCTCCCTTCCCTGCCACCTGCTGTTTTGTCTCAACCGACTTCTGTTTCAACCACTGTCAACAGGTTGTAGCTACACAAGCTGTGTCCGACGTGTCCGACAGGGCTGTATTTGAGTGATCATTACACGGATGATAGCTTTGCCTTTCTTTGGCTTGCCCGTGCTTACTAATGTGTATGGAGACTGGGGTTTAGGTTTATGggtttatttgttaaattatgatTAAGtgatttttggttaatttatatttcttttgtttaagTTCTGATAAAAGACTTTCATTTCTGTTGAAACTTTATGATTTATCTGTTAATCTTGgttatttttgtttgtctcTAGGCAGCTAGGATTAACTGATTTTTGGTTCATTTCTATTTCTGTTTAAGTTTTGGTAAAGACTCATTTTTGTTGAAACCTTTATGGTTTATTTGTTAATTTTGGTTATTTGTTAGGCTCTAGGCAGCTATTAAGGCACCTTTGCTGCCTAGATTTGCCTGAGATTGAATTtgtttctcatttatttttggtttgAGTCATTCCCCCCCCAATAACTGAATGTTCTTCTCCCATAGATGCTGAGTGCCGAAGGTGGTAGTGTCTGTGTCCCCGGTGGTGGTGTCTCCCTCCTGTGTGCTGCGTTTTCCCCCTTTggtttattttgagtttttcaccactgtgtgtgtgtgctcacgtGTGATTGGGGTGATCCTTCCCTGAGAACCCACACCCCTTGACCCTGTCCCTCCATCGGTAAGGCCTCAGCACTTATTTCCCATATTTAGTGTCTGGTATTTTAAatagtattttatatttgatgttTTAGTAATTGTATTAATAAAACCATTGTTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636489.1 lncRNA upstream 72043 37184953 ~ 37186028 (+) True LOC120544372
TU232252 lncRNA upstream 155387 37102425 ~ 37102684 (+) True G171378
TU232250 lncRNA upstream 163685 37094066 ~ 37094386 (+) True G171376
XR_005636509.1 lncRNA upstream 301250 36954669 ~ 36956821 (+) True LOC120544502
XR_005636484.1 lncRNA upstream 347988 36907954 ~ 36910083 (+) True LOC120544361
TU232294 lncRNA downstream 15954 37275334 ~ 37275666 (+) True G171416
TU232313 lncRNA downstream 39623 37299003 ~ 37308316 (+) True G171428
TU232347 lncRNA downstream 61783 37321163 ~ 37368209 (+) True G171446
TU232368 lncRNA downstream 258498 37517878 ~ 37519704 (+) True G171464
TU232398 lncRNA downstream 273092 37532472 ~ 37533330 (+) True G171474
XM_039826379.1 mRNA upstream 34662 37187809 ~ 37223409 (+) True LOC120575584
XM_039776763.1 mRNA upstream 851681 36404414 ~ 36406390 (+) True LOC120543623
XM_039826475.1 mRNA upstream 932433 36316843 ~ 36325638 (+) True LOC120575649
XM_039826485.1 mRNA upstream 1286278 35968403 ~ 35971793 (+) True LOC120575655
XM_039776757.1 mRNA upstream 1480446 35775979 ~ 35777625 (+) True LOC120543618
XM_039776717.1 mRNA downstream 419221 37678601 ~ 37695632 (+) False LOC120543587
XM_039776716.1 mRNA downstream 422551 37681931 ~ 37695632 (+) False LOC120543587
XM_039776715.1 mRNA downstream 429732 37689112 ~ 37695632 (+) True LOC120543587
XM_039776718.1 mRNA downstream 429732 37689112 ~ 37695632 (+) False LOC120543587
XM_039776649.1 mRNA downstream 437636 37697016 ~ 37697394 (+) True LOC120543545
unassigned_transcript_962 other upstream 1633459 35624541 ~ 35624612 (+) True trnaw-cca_23
unassigned_transcript_961 other upstream 1634405 35623595 ~ 35623666 (+) True trnaw-cca_22
unassigned_transcript_960 other upstream 1636297 35621703 ~ 35621774 (+) True trnaw-cca_21
unassigned_transcript_959 other upstream 1637246 35620754 ~ 35620825 (+) True trnaw-cca_20
unassigned_transcript_958 other upstream 1638201 35619799 ~ 35619870 (+) True trnaw-cca_19
TU232287 other downstream 2536 37261916 ~ 37262336 (+) True G171409
TU232385 other downstream 284220 37543600 ~ 37613796 (+) False G171468
TU232389 other downstream 284220 37543600 ~ 37601804 (+) True G171468
TU232416 other downstream 346650 37606030 ~ 37616661 (+) True G171483
TU232382 other downstream 407841 37667221 ~ 37669599 (+) False G171468

Expression Profile