RNA id: TCONS_00070537


Basic Information

Item Value
RNA id TCONS_00070537
length 2400
RNA type mRNA
GC content 0.49
exon number 23
gene id XLOC_036022
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 49936585 ~ 49969184 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGCAGCGCTGACTGTTTCCATCAACACAGAAAGACTGACAATCAAAAGCTGTCTCCATGGTGATGAAGTCATCGGTCGAGGAGGAGGAGGGAGGATGGGGTCTTGGGATCCCAGAGAAGATGAGAAACAATGCCAACTGGGTGGACGTCACCCAGGAGTTTAAAGGAGCTTGtaaagAACTCAAACTTGGCGAGCTGCTCCATGACAAGCTATTCGGTCTGTTTGAAGCCATGTCCGCCATTGAGATGATGGATCCGAAGATGGATGCTGGAATGATCGGAAATCAAGTCAACCGTAAAGTCCTCAACTTTGACCAAGCTGTTAAGGATGAAGCCATACGGGTGAAGGATTTAAGTATTCCTGAGCTCATTGGGATCATGGACACATGTTTCTGCTGTCTGatCACGTGGCTGGAGGGGCATTCTCTGGCTCAGACTGTCTTCACATGTCTGTACGTTCATAATCCGGATCTGATTCAAGACCCTGCGCTCAAAGCCTTCGCTCTGGGCATCCTGAAAATCTGTGACATCGCCCGTGAAAAAGTCAACAAAGCTGCCGTGTTTGAAGAGGAAGATTTTCAGGCCATGACTTACGGCTTTAAAATGGCCAACAACGTAACTGATCTGAGAGTGACGGGAATGCTGAAAGATGTTGAGGATGAACTTCAGAGGAAAGTGAAGAGTACCCGCAGTCGACAGGGTGAACAGCGAAATCCTGAGGTGGAACTGGATCATCAGCAGTGCTTGGCTCTGTTCAGTCGTGTTAAATTCACTCGTCTGCTGCTCAGCGCGCTCATCTCCTTCACCAAAAAAGAGACGAGTGCTGTGAGCGAAGCACAGAAGCTGATGAGTCAAGCTGCTGATTTACTGCCTGCAGTCCATGCTACCATACAGTACGGCATACAGTCGCAGAACGACACTACCAAAGGAGatcACCCGATCATGATGGGTTTTGAGCCTCTGGTTAACCAGCGCCTGCTCCCACCTACGTTCCCCCGATATGCCAAGATCATCAAGCGAGAGGAGATGGTCAACTACTTCAGCAAACTCATTGAGCGCATTAAGAGCGTGTGTGAGGTCATCAACATCACCAACCTGCACAGCATCCTGGATTTCTTCTGTGAATTCAGTGAGCAGTCTCCATGTGTGCTGTCTAGATCTCTACTGCAGACCACGTTTCTGATCGACAACAAGAAGGTGTTTGGGACTCATCTGATGCAGGATATGATTAAAGATGCGCTGCGCTGTTTTGTCAGTCCACCTGTTCTTTCCTCAAAATGCAGTTTGAATAATAACCACCAGGCTAAAGATTATATCGACTCCTTTGTCACACACTGCACGCGGCCGTTCTGCAGCCTCATCCAGATTCACGGACACAACCGAGCCCGACAGAGAGACAAACTGGGTCACATTCTGGAGGAGTTCGCCACACTTCAGGATGAGgCAGAGAAGGTGGACGCTGCTCTTCACGGTCTGCTGATGAAGCTGGAGCCGCAGCGGCAGCATTTAGCCTGTCTGGGCACCTGGATCCTCTACCACAACCTGCGCATCATGATCCAGTACCTGCTCAGCGGCTTTGAGCTGGAGCTCTACAGCATGCACGAATACTATTACATCTACTGGTATTTGTCAGAGTTCTTGTATGCGTGGCTGATGTCGACGTTGAGTCGAGCCGACAGCTCTCAGATGGCGGAGGAGAGAATCCTGGAGGAGCAGCTCAAAGTGCGCAGCAGCAAGAAgagcaagaagaagaagaaagCTCGTCCTCTGAGTAAAGAGATCACCATGAGCCAGGCTTACCAGAACATGTGTGCTGGCATGTACAAGACGATGATCGCGCTGGATATGGATCGAAAGGTGCGCAAACCTCAGTTTGAGCTGGACAGTGAGCAGGTGCGCTACGAGCATCGCTTCGCCCCTTTCAACAGTGTGGTCACGCCACCACCAGTTCACTACATCCAGTTTAAGGAAATGTCCGATTTGAAGAAGTACAATCCTCCTCCTCGCTCAGCGGATCTCTATATGGCTGCCAGTAAACATTTCCAGCAGGCCAAACTCATTCTGGAAAATGTCACCAGCCCTGATGCAGAGGTTAATCGTATCCTTAAAGTGGCCAAACCCAATATTGTTGTAATGAAGCTGCTGGCTGGAGGACACAAGAAGGAGACCAAgGCCCTTCCTGAATTTGACTTCTCTGCTCACAAATACTTCCCCATAGTCAAAATCCTTTGAGATCCTCCACGTTTCCAGGCCTGGACTCATCTTCTGTAAAAAAGCTGAATAACTTCATATCCATCGCTGTAATGGTACAGTTATGGATGCCCTCACTGTGGTTTGGTTTGAACAGTTCGTGTTTTTGTTTGGTTGATTCAAATCTATTAAattgggaggaaaaaaaaa

Function

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006474 N-terminal protein amino acid acetylation biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0017196 N-terminal peptidyl-methionine acetylation biological_process
GO:0048659 smooth muscle cell proliferation biological_process
GO:0032006 regulation of TOR signaling biological_process
GO:0005844 polysome cellular_component
GO:0031417 NatC complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-306 Acts upstream of or within several processes, including blood vessel morphogenesis; regulation of TOR signaling; and somitogenesis. Predicted to be located in cytoplasm. Predicted to be part of NatC complex. Is expressed in blood vasculature; epidermis; and head. Orthologous to human NAA35 (N-alpha-acetyltransferase 35, NatC auxiliary subunit).

Ensembl:

ensembl_id ENSDART00000098707

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072287 lncRNA upstream 312871 49616496 ~ 49623714 (+) True XLOC_036019
TCONS_00070528 lncRNA upstream 499832 49433678 ~ 49436753 (+) False XLOC_036017
TCONS_00072286 lncRNA upstream 625769 49308636 ~ 49310816 (+) False XLOC_036015
TCONS_00072285 lncRNA upstream 625769 49308636 ~ 49310816 (+) True XLOC_036015
TCONS_00072284 lncRNA upstream 705242 49222114 ~ 49231343 (+) True XLOC_036014
TCONS_00072288 lncRNA downstream 69507 50038691 ~ 50041815 (+) True XLOC_036024
TCONS_00072289 lncRNA downstream 287602 50256786 ~ 50273478 (+) True XLOC_036027
TCONS_00072290 lncRNA downstream 539734 50508918 ~ 50514033 (+) True XLOC_036029
TCONS_00072291 lncRNA downstream 562519 50531703 ~ 50532188 (+) False XLOC_036030
TCONS_00070553 lncRNA downstream 1009834 50979018 ~ 50986475 (+) False XLOC_036036
TCONS_00070534 mRNA upstream 71210 49778486 ~ 49865375 (+) False XLOC_036021
TCONS_00070535 mRNA upstream 72320 49778756 ~ 49864265 (+) False XLOC_036021
TCONS_00070532 mRNA upstream 166598 49766338 ~ 49769987 (+) False XLOC_036020
TCONS_00070533 mRNA upstream 166854 49768148 ~ 49769731 (+) True XLOC_036020
TCONS_00070531 mRNA upstream 330464 49571025 ~ 49606121 (+) True XLOC_036018
TCONS_00070538 mRNA downstream 5976 49975160 ~ 49991281 (+) False XLOC_036023
TCONS_00070539 mRNA downstream 5989 49975173 ~ 50037559 (+) True XLOC_036023
TCONS_00070540 mRNA downstream 181650 50150834 ~ 50180226 (+) True XLOC_036025
TCONS_00070541 mRNA downstream 221558 50190742 ~ 50217915 (+) True XLOC_036026
TCONS_00070542 mRNA downstream 523911 50493095 ~ 50493653 (+) False XLOC_036028
TCONS_00070536 other upstream 117714 49801662 ~ 49818871 (+) True XLOC_036021
TCONS_00070526 other upstream 556282 49378890 ~ 49380303 (+) True XLOC_036016
TCONS_00070520 other upstream 831534 49092039 ~ 49105051 (+) False XLOC_036010
TCONS_00070506 other upstream 1203727 48732153 ~ 48732858 (+) True XLOC_036001
TCONS_00070498 other upstream 1409039 48514551 ~ 48527546 (+) False XLOC_035995
TCONS_00070552 other downstream 997622 50966806 ~ 50967999 (+) True XLOC_036035
TCONS_00070562 other downstream 2192677 52161861 ~ 52162964 (+) True XLOC_036043
TCONS_00070576 other downstream 2561753 52530937 ~ 52543392 (+) False XLOC_036052
TCONS_00070587 other downstream 3054355 53023539 ~ 53023617 (+) True XLOC_036064
TCONS_00070588 other downstream 3054495 53023679 ~ 53023764 (+) True XLOC_036065

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000050_04844985_04863467.mRNA True 2214 mRNA 0.48 22 CI01000050 4844985 ~ 4863467 (-)