RNA id: XM_039783849.1


Basic Information

Item Value
RNA id XM_039783849.1
length 2194
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC120547985
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 17007473 ~ 17016963 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGGAGGGCAGCCTCACTCGTGAGTCAGAGGCATGAAAGAAACACACCAGCCAGCCTGGGTGAGGAGGtcccttttaatatttgttaacaGGTTATTGAGATGGCGTCTTTGAAATATAAGGGTTCCCCCAGGAAAAAGCCCAACTCAGAGCTTGATGTGATTGTCAGCAGTCTAAGGAAGGAGAATGCCTATCTGAAGAAAACCCTGGTTGAGTTGTCTCGTCAACATTCAGAACATAATAAGCTCGTAGAGAGATTCCTCTCTCTTGAAACTGTTAGGCTGGAGAGTTGtcagcagctaacagctaaagATGAGAAGGTTGCATTGCTGTCAGAGCAACTGAGTAAGAAAGAAGGGAAGATGATGGACGTAGACTCCAATTCAGATGAATGGGCCTCAACCAACACCACAATAGAGCTCCAAAATCACCTCAGTTATGCCTTGGAGAAGAACAAGCAGTGGCTGGAATATGACCAGCAGAGAGAGGCCTATGTGAGGGCAACTCTGGCCAGAATGTTATGGCTGGAGAAGGAGCTGAACGAAGCCAATCAAGCCCGCTCACAGCAGCACAATGAGGACCATTCAGATGTGAGGGAGCAAATAAGCCAGATGCAGGAGCACTATGAAATACTCTTACAGAAAGCCAAAGACGAGCTGGAGGTGCTCAGGGAGCAGCTCAACATGGCCCACCAGAACCTGAAAATCACCCAAAACTGTTGCAAGGAAAGGGAGAGCGAGGTGGAAGAGCTCAAGCAGCAACTGCAGACTGAAAATATGAGCGGAAAAAGTGCGCCGGAAGATCATCATCGCTCTGAGGATGAAGAGCAATGGCTGACTGCTGAGACCGAAGACCTCCAGTGCAGACTGGATGAGGAGAAGCGCAGGTCAGCTAACTTTAAGCAGCAGTTGACTTTCTTTCAGAAGTGTTTGGGAAATTGTCACAATGAAGACCAAGAAAAGATTGTAGATCTGGAGCGACAGGCGCACCACTCAGATCATGTTGCCACCACTATTGTCGAGACCCTGGCTATCACTGCTGTCTTCCTGGTCTCCGTGACATCAAATGCGGGAGCTGCAGCCCTGGTAACCTGGGAACGCAGACTGCTGGCCAACAAGACCATCCTGACCCTCAACTTGTTTGTGGCCGACCTGCTGTTTGTCAGCCTGATCCCACTGATCGTGGCCGTGCGGTGGACTGAGTCCTGGATGCTGGGGTTTACGGCCTGTCACACTGTGCTGTATGTCATCTGTATGAGCGGCTGTGCCACCATCACCACCCTGGCCTCCATCAGTGTGGAAAGGGTCCAGGCCATTCTTCGGCTGCAACCTGTACCCATTTTAAACCGCAGGGTGGTGATTGCTACCCTCTTCTTCATCTGGGCCTTTTCTGCACTCACCTCCATACCTCTCAGTCTGTTCTTCACTGTGATGGAAGTGGATTTCCCTGAGCAGAAACGTGTACACATTTGTACTCTCAGGTGGCCCGACACAACTGCAGAGATTGTGTGGAACGTGGCCTTCACTGCCCTCTGCTTCCTTCTTCCAGGATTCATAATTGTGGTCAGTTACAGCAAAATATTACAGATTGCTAAAAGATGTAGGCTAGGGCTCCGAGACAGCCAGCCAGTTAGAGACTCTCTTGGGTACCATGTGTCCCGCCAGGATATGAAGCTCTTCCGTACCCTTCTGGTCCTTGTGCTCTCTTTCTTAATCATGTGGAGCCCTATTTTCATCATCACCTTCCTCATCCTGGCCAGGAACTTCCTAGATCACCTAGATGTTTCCTCTACCATGTTCTTCTGGGTGGTAACGTTCACACTGGCCAACTCAGCCCTCAATCCCATCCTTTACTCAGTCTGCCAGTTCAAGAACGGCTGGCGCAGGTTCTGCTGTGGCTCTGTTATAGTACCACTGAGAAAAGGACCTCGCAGCAGTGGTCAAGTGCAAGGGATACATCTATGATTATCATGATTGTTTTGTCAAATAGAGGATTCAAACTTACATAAAGCGTTCAGCACATGGTCCACACCTCCGGTGACATGATATACCTCTTGTGTAATATACAATGCTCGCTTGtaattattatatttaaataCAGAAATTATTTCATACTAATATGAGATTGAAACGCCTGTGAAAGAGCAAACACTGTAAAGATAGGTAATTTTATAATAAATCATtgcttttttgtga

Function

GO: NA

KEGG:

id description
K08425 FFAR4, GPR120; free fatty acid receptor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263818 lncRNA upstream 348403 16656578 ~ 16659077 (+) False hif1an
TU263790 lncRNA upstream 382383 16622947 ~ 16625097 (+) False trmt2b
TU263791 lncRNA upstream 388888 16616810 ~ 16618592 (+) True G194261
TU263786 lncRNA upstream 393637 16608474 ~ 16613843 (+) True G194257
TU263783 lncRNA upstream 402420 16591475 ~ 16605060 (+) True G194254
TU263946 lncRNA downstream 21323 17038286 ~ 17039656 (+) True G194375
TU264038 lncRNA downstream 246959 17263922 ~ 17289530 (+) True G194445
TU264049 lncRNA downstream 283478 17300441 ~ 17302122 (+) True G194451
TU264073 lncRNA downstream 389912 17406875 ~ 17409080 (+) True G194469
TU264092 lncRNA downstream 414608 17431571 ~ 17431863 (+) True G194485
XM_039784684.1 mRNA upstream 71427 16935565 ~ 16936053 (+) True c19h10orf53
XM_039784792.1 mRNA upstream 72793 16926549 ~ 16934687 (+) True chata
XM_039784793.1 mRNA upstream 81546 16923301 ~ 16925934 (+) True slc18a3a
XM_039784536.1 mRNA upstream 96425 16903375 ~ 16911055 (+) True rgra
XM_039784416.1 mRNA upstream 130048 16864593 ~ 16877432 (+) True cdhr1a
XM_039783847.1 mRNA downstream 1068 17018031 ~ 17024966 (+) True LOC120547984
XM_039783805.1 mRNA downstream 10966 17027929 ~ 17033153 (+) True LOC120547963
XM_039783815.1 mRNA downstream 115315 17132278 ~ 17164831 (+) True tp53bp2a
XM_039783816.1 mRNA downstream 115315 17132278 ~ 17164831 (+) False tp53bp2a
XM_039783817.1 mRNA downstream 128584 17145547 ~ 17164831 (+) False tp53bp2a
TU263878 other upstream 116530 16889400 ~ 16890950 (+) True G194325
TU263682 other upstream 653649 16353191 ~ 16353831 (+) True G194185
TU263049 other upstream 2931023 14074642 ~ 14076457 (+) True G193730
XR_005637194.1 other upstream 4636210 12351325 ~ 12371270 (+) False LOC120548560
XR_005637204.1 other downstream 1552020 18568983 ~ 18569123 (+) True LOC120548592
TU264570 other downstream 1664026 18680989 ~ 18682296 (+) False prdm8
TU264674 other downstream 1827467 18844430 ~ 18850903 (+) True G194908
TU264838 other downstream 2109257 19126220 ~ 19131941 (+) True G195036
XR_005637199.1 other downstream 2151023 19167986 ~ 19200005 (+) True mcph1

Expression Profile