RNA id: TCONS_00071193


Basic Information

Item Value
RNA id TCONS_00071193
length 3118
RNA type mRNA
GC content 0.56
exon number 15
gene id XLOC_036419
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 22761854 ~ 22838364 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTAAGGCCACTGTTAAGAAGCTGCACTGGCGCTCAAAAGTGCAGGAGAGCTTCGTCCCGCTGGGCGGAGGCTCGGGAGAGCTTGGCGTGGCCATTGGAGGTGGTGCAGATTATGGAGAGTTCCCATTCGTTACTGCAGCACCTGGGGGAGGAGCCACTGTTGGAGACATCATCCTTGAGATTGGGGGAACACCTGTCCTGGGACTAACTTTGGGAGACGTAAGAGGGGTTCTCAACTCATGTCCACATCCCATTCGGATCAAAACCGTCTCTCCAGGCTCGACTCTCTGTAAGGATCTAAGACTTTACCTGAGCAAGTGCTTTACACCAGGATCCATGGACAGCCAACTCCAACAAGTCATACGGGAGAACCTCTACCTGCGCGCCGTGCCCTGTACAACAAGGCAACCACGGGACGGAGAAATCTCAGGGGTGGATTATAACTTTGTGTCCATTGAAGAATTTTTCTCTCTGGAAGAGTCTGGAGCCTTGCTGGAAAGTGGGAAGTTCAAAGGGAACTATTATGGCACACCTCGGCCAGTTCACATCGGTCCTGACAGCCCCCCCATTACATACCAGGAACATCGAAACCTCCTGAGGAACTTCCGTACCCGCAGCAAATCACTCAGCAACCTGGAAAAAGCAGTGGAGGAAGGTGACAACAGCGAGGAAGACTCTGGTCTGTCAGCGGGGTCCGCAGGGGCCAGCAGTGCGCCTCCTACCACCATTGTCTCACCTAATCAGACATGGGACTTGGGCGGCGTGCGGGACGGAGGGCTTCCCATTGAGAACGGAGCACGTGGAGGGGCATTGCCTGAAAACTGGGAGCTGGCGTTCAGTGACACAGGAGAACCCTATTACATCAAcCATAACTCAAAGACCACAAGCTGGCTGGACCCAAGGACTCAGGGCAAAGAGATTGTCAGCAAGACAgagtTACCTGCATTCACAGACCAGCCATCTGATCTGAAGGGCTATTCCATACACACTCGCTTGCTGAAGGGACCCCGTGGGTTTGGCTTCAACATTGTGGGTGGCAGCAGACCTCGAGAGTTTCTGCAGGTGTACAGTGTCACTCCCGGGGGACCGTCTGCACTCAAAACagcgGATATCCTGGTGTACATCAACGACTCATGTGTGCTGGGTTTGTCTCATAAAGAAGTAGTAGAAATGCTGAAATCCGTCCCCATGGGTCACAGTGTGGATGTTGTTCTTCGTCGAGGTTACCCCATGCTCTACAACCCTGATGGCTGCCCCAAAACCAGTCTCGCCTCCCCTTCTGACACACCCAACACCAACCCTGCAGCCCCTGGTTCTGCTCAATCCCAGGTCCAGCATCCTGATGGACAGCAACCTGCCTTTGTGAACCTCAACCGCTCCATGTCACTCCACAACAACTTCTACCCCCGCATGCAGAAAGAGGCCTTGGATGCCAATGGGAACACTGCACCCCAGCCTTCCTACTCAATGGCCAATGGAAATGGAGTTGGAGGGATTATAGGGCTGGGGGCGGTGCCTTTATCAAACGGCCCCGCCCCTTCAGAGCGAATGAGCTCCAGTCATAGCGATACAGAGGTCAGCTCTGTTGTCACACGCAGAGCTTCCCTTATCAGAAGCTACAACAACAACTCTCTTCCAGCCCCTTCTCACACCAATCACAGTTCCAAGTCTTCCGAGAGTGATTTCTCTTCTACTGCGCTCCCACTACCCCAGCCTGAGGTGGGTCCTACTGCTCCACCACCAGGAGCACCCAGCATCCAGCGGCCTCCCATGCCCCAAACATCTCTTGCCGTCGCACCCCCAACCGAGCACCCACCCTGTGGTTTCAACGGGTGTCCAGCCAACAACCCCCCGCGGCCTCTCCCGGGTGGCCTAGGGTCCCCAGGAGCCCCAGGTGGGGTAGGCTGTGGGGGAGGGGGTGAGCTGGTACCTGTGGCCTTGGGCAGGAGCGAGGGAGGGGGAATGGGTTTCAGTGTGACGGCTGGGGGGCAGGGAGGTCAGTTGGCAGTGGTGAAGAGAGTCTGGGACAGGCGACAGTGCCACTCCTTACAGCCAGGGGATGCCATTATTAAAATCAACGGGGCTGATGTGCAGAGCCTCAGCTTTGCACAGGTGCAGCGGGTGCTGCAAGAACATACCAAACAGGGGGAGGTGGTCTTACTGGTTTACAGAGGAGGCTCCCCGAATGCCTATAAGAGACCCCCTCCTTCACTGGGCACTCCTGATCTGACCTCGCCCTCCTCTGATGGTGCTGTGCCCAGCCAGAGCACCCTCTCTCCCTCCTCGCCCTGTGGTGACCTTCCCAACCTGGTCCAAAGCACCAGCTTCCTGGACTCAGTGCCCGTTACCCTGACCCTAGAGCCTCGGGACTGGTTAGGAGTGGAGGACGGACCTGCTCAGTGGAGCCGAACTGCTGTCTCTAACCCTGGCGCAGTATCTAAAAGCCATGTGGACACAAGGGCAGCAATCTCTTCCAGAGCCATGGATGTGGAGTTGAGACGAAGACCAGGAGAAGGATTCGGGTTTGTCATTGCATCCCAGGATGTAGTGAATGGAACCTCGTCTCTAGTGTCTCATAGGTTTGTGACGGTGCGTCGGGGGAGCCCAGCGGCGCGCAGTGGTCAGATTCAGCCAGGAGATCAGCTAGAGGCTGTGGAGGGCAGATCGGTGGTCACGCTGCCTCACAGAGACCTTGCACAGATCCTACGCAGAGCTGGAAACACACTCAGACTCACCATCGTACCACGCTCTCACACCAACAATAATCTGCCTGAATACCCTGACTTTGATGCTGAGAGCCGGTTGAGGAAAGGGCATCGGGCCAAGCAAAAGgATTCCCAGTTTTATAATGTTGATCTTGAGAGGGGACCAACAGGATTTGGTTTTAGTTTGCGAGGTGGAAGTGAGTATAACATGGGTCTGTATGTGCTTGGTCTGATGGAGGGCGGCCCGGCCTCACGCAGTCAGAAAATACAGGTGAGTGATCAGCTGGTGGAGATTAATGGAGACAGCACAGTCGGCATGACACACAGCCAGGCCGTTGAGCAGATCCGAAAGGGAGGAGCACGGATACACCTCGTACTGAAGAAAGGCAACGGATACGTACCGGATTATG

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005911 cell-cell junction cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-115 Predicted to be involved in signal transduction. Predicted to be located in cell junction and membrane. Predicted to be active in cell-cell junction and cytoplasm. Orthologous to human MAGIX (MAGI family member, X-linked).

Ensembl:

ensembl_id ENSDART00000146563

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072450 lncRNA downstream 291814 22405875 ~ 22474642 (-) True XLOC_036413
TCONS_00072449 lncRNA downstream 332346 22384742 ~ 22434110 (-) True XLOC_036411
TCONS_00072448 lncRNA downstream 338437 22383250 ~ 22428019 (-) True XLOC_036410
TCONS_00071168 lncRNA downstream 423234 22341606 ~ 22343222 (-) True XLOC_036409
TCONS_00071167 lncRNA downstream 423253 22341606 ~ 22343203 (-) False XLOC_036409
TCONS_00072451 lncRNA upstream 35008 22862004 ~ 22867103 (-) True XLOC_036421
TCONS_00072452 lncRNA upstream 294517 23121513 ~ 23123787 (-) False XLOC_036425
TCONS_00072033 lncRNA upstream 307704 23134700 ~ 23136454 (-) False XLOC_036426
TCONS_00072032 lncRNA upstream 307704 23134700 ~ 23136454 (-) False XLOC_036426
TCONS_00072034 lncRNA upstream 308686 23135682 ~ 23137249 (-) False XLOC_036426
TCONS_00071182 mRNA downstream 26699 22567363 ~ 22739757 (-) False XLOC_036418
TCONS_00071185 mRNA downstream 26699 22618504 ~ 22739757 (-) False XLOC_036418
TCONS_00071188 mRNA downstream 67805 22622506 ~ 22698651 (-) True XLOC_036418
TCONS_00071184 mRNA downstream 105778 22618504 ~ 22660678 (-) False XLOC_036418
TCONS_00071187 mRNA downstream 123732 22622506 ~ 22642724 (-) False XLOC_036418
TCONS_00071195 mRNA upstream 135694 22962690 ~ 22964486 (-) False XLOC_036422
TCONS_00071196 mRNA upstream 137156 22964152 ~ 22965214 (-) True XLOC_036422
TCONS_00071197 mRNA upstream 138621 22965617 ~ 22965916 (-) True XLOC_036423
TCONS_00071198 mRNA upstream 213731 23040727 ~ 23081640 (-) False XLOC_036424
TCONS_00071199 mRNA upstream 217758 23044754 ~ 23081511 (-) False XLOC_036424
TCONS_00071180 other downstream 227506 22536028 ~ 22538950 (-) True XLOC_036416
TCONS_00071179 other downstream 227780 22533571 ~ 22538676 (-) False XLOC_036416
TCONS_00071166 other downstream 424135 22341606 ~ 22342321 (-) False XLOC_036409
TCONS_00071164 other downstream 439753 22320847 ~ 22326703 (-) False XLOC_036408
TCONS_00071158 other downstream 479245 22284294 ~ 22287211 (-) False XLOC_036407
TCONS_00071194 other upstream 17704 22844700 ~ 22845798 (-) True XLOC_036420
TCONS_00071201 other upstream 295155 23122151 ~ 23122372 (-) False XLOC_036425
TCONS_00071202 other upstream 295766 23122762 ~ 23122874 (-) True XLOC_036425
TCONS_00071249 other upstream 2216205 25043201 ~ 25044808 (-) True XLOC_036463
TCONS_00071268 other upstream 2823233 25650229 ~ 25665761 (-) False XLOC_036471

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00009724 True 2577 mRNA 0.68 14 CM030126.1 45057674 ~ 45087487 (-)