RNA id: TCONS_00072034


Basic Information

Item Value
RNA id TCONS_00072034
length 691
lncRNA type inter_gene
GC content 0.38
exon number 5
gene id XLOC_036426
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 23134700 ~ 23137569 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtctcttcacccaacggattcatcctcgtacaagactgaagtaaaggtgaaatgactataacgttaaggtgtacctgataatagctaAAGTGTAAGccacagccactgatgttgaaacactgatgctaccaatcaaccctcgcttgattattaaaggtaatgttgatgccttcctcatttttattagatttttaaatgtcaggtttttcacagatttgttgtgagcagtttcttgtacaaactctttttcttcttccagaagttccaccagtacctccagtagtagtaaatattagacaaagatttttttaaactatagtttttatttttattagcaattttactgggcatgtgtgtttgtttgcttggtttttaataggcagagcatggaatgtcaactttgtttctacaaacaaatttaattattcacaaacacctctaatttagtccttctttcccccttttagtgttattccttggagggtcgagtggtcatgggacctcacctggatttcacaactgactttggatctggtctgaaactgaagtatgctgaagatgccttttgcactctggaatttaagggccgtgttgcagacacaaattgtttgtctgtgctggagaccagaggggaagctgtctttaaaaggatggggctcttataccatatgtgaagttacctattcaggtg

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072452 lncRNA downstream 11895 23121513 ~ 23123787 (-) False XLOC_036425
TCONS_00072451 lncRNA downstream 268579 22862004 ~ 22867103 (-) True XLOC_036421
TCONS_00072450 lncRNA downstream 661040 22405875 ~ 22474642 (-) True XLOC_036413
TCONS_00072449 lncRNA downstream 701572 22384742 ~ 22434110 (-) True XLOC_036411
TCONS_00072448 lncRNA downstream 707663 22383250 ~ 22428019 (-) True XLOC_036410
TCONS_00072041 lncRNA upstream 53738 23190987 ~ 23192100 (-) True XLOC_036427
TCONS_00072042 lncRNA upstream 80249 23217498 ~ 23219956 (-) True XLOC_036428
TCONS_00072453 lncRNA upstream 103613 23240862 ~ 23245449 (-) False XLOC_036430
TCONS_00072454 lncRNA upstream 103613 23240862 ~ 23250204 (-) True XLOC_036430
TCONS_00071206 lncRNA upstream 250635 23387884 ~ 23390242 (-) True XLOC_036432
TCONS_00071200 mRNA downstream 54015 23044917 ~ 23081667 (-) True XLOC_036424
TCONS_00071198 mRNA downstream 54042 23040727 ~ 23081640 (-) False XLOC_036424
TCONS_00071199 mRNA downstream 54171 23044754 ~ 23081511 (-) False XLOC_036424
TCONS_00071197 mRNA downstream 169766 22965617 ~ 22965916 (-) True XLOC_036423
TCONS_00071196 mRNA downstream 170468 22964152 ~ 22965214 (-) True XLOC_036422
TCONS_00071203 mRNA upstream 53737 23190986 ~ 23194408 (-) False XLOC_036427
TCONS_00071204 mRNA upstream 89851 23227100 ~ 23240156 (-) True XLOC_036429
TCONS_00071205 mRNA upstream 115601 23252850 ~ 23328264 (-) True XLOC_036431
TCONS_00071207 mRNA upstream 277774 23415023 ~ 23416362 (-) True XLOC_036433
TCONS_00071208 mRNA upstream 422934 23560183 ~ 23578660 (-) False XLOC_036435
TCONS_00071202 other downstream 12808 23122762 ~ 23122874 (-) True XLOC_036425
TCONS_00071201 other downstream 13310 23122151 ~ 23122372 (-) False XLOC_036425
TCONS_00071194 other downstream 289884 22844700 ~ 22845798 (-) True XLOC_036420
TCONS_00071192 other downstream 352460 22766456 ~ 22783222 (-) False XLOC_036419
TCONS_00071180 other downstream 596732 22536028 ~ 22538950 (-) True XLOC_036416
TCONS_00071249 other upstream 1905952 25043201 ~ 25044808 (-) True XLOC_036463
TCONS_00071268 other upstream 2512980 25650229 ~ 25665761 (-) False XLOC_036471
TCONS_00071278 other upstream 2614876 25752125 ~ 25755298 (-) False XLOC_036475
TCONS_00071280 other upstream 2619433 25756682 ~ 25761038 (-) False XLOC_036475
TCONS_00071284 other upstream 2681373 25818622 ~ 25846188 (-) False XLOC_036477

Expression Profile

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