RNA id: TCONS_00071185


Basic Information

Item Value
RNA id TCONS_00071185
length 4890
RNA type mRNA
GC content 0.57
exon number 15
gene id XLOC_036418
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 22567363 ~ 22739757 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGATGCTGGGCAGGGCAGCCCGGAAAGCCCTAACAGGGCGGTGGAGTACCTGCTGGAGCTCAACAACATCATCGAGAGCCAACAGAAGCTACTGGAAACTCAGCGTCGGCGCATTGAGGAGCTGGAAGTGCAGCTGGACCGGCTTAGCCAGGAAAACAAAGACCTAAGACTGGACCGACAGCCCTGCCCACCTCCACCTCCACCTCCCATTCACCCTGCCCCACCACCCACTTCTCACGCTGCAACTTCCACCAACGCCTACACCAATCAGATCCACAACAGTGGGCCCATCCCAATACCTATACCGGCTCCGGCGCCCCCACCCCCACCTCCACCTGTGCCACCCCGGGACCGCCGCATCATTGCCAACACGCACACTAGGCTCGGCCAAAGCCTGTCAGCTGGATCCATTTCCACGGACAGAGAGGGAGAACGAAAACGAGAACGAGACGTTGCCACTACCAGTTTGGGAAGCACTCTGCCAAGACAtGTGGAGGGAGATCCTCAGTGTCCGGACACAACTAGCTTTTCTGACAGCACTTGCAGTCAGGGCCCATACCTGGGCAACTCGGAACGCTACGGGAACATTCGAAACATTCCCGGCCCTCAGGGGCCTCCTGTGGGCACTGCAAGCCCAGCGAGCCTGGCCTGGGCACAACGGAGCCGCCACCAGCCCGCCAGCCTGGCACTCCGcaagcaggaggaggaggagagcaaGCGCTGCAAAGCGCTCTCTGACAGCTATGAGCTCTCCACGGACCTGCAGGACAAGAAGGTGGAGATGCTGGAGAGGAAGTATGGTGGATACTTCCTGAGCAGACGAGCGGCTCGCACCATACAGACGGCCTTTCGACAGTATCGCATGAACAAGAACTTTCAGCGGCTGCGCAGTTCTGCCTCTGAAAGCCGAATGACTCGCCGGATCATCCTGTCAAACATGCGTTCACAGTACTCCTTTGATGAGCGACAGCCACAGGTTCAGCCCCAGACGCCCCAGCAGCAGCAAGGTCGATATACCAGCCATCACACTTCAGGCACAGCTGGCCAGACAGGAAGTACAAACACACAGCAGGAGACGGACTCACCCGCACACTGTCCTTCAGACAGAGAGGAGTACTCACATGCAGATGATGCCTTCAACAAACAGGTGACGTCTTTAGCTGACTCAATGGACGACACTTTGACATGTCAGTCGGGCCGAGGAGATTCTCAGGACGGTGGCGAAGGTGCCAGGGAGGAGAGCGTGGATTTTGGCGAGTGTGTTTGGAGCAACAAACCTACCTCTCGCAGGGGTGTGGTAGGGGAACAGGAGCGCCTGGGCGTCATGCATGAGGACAGCACAGCCACCTCATACAGTGATGTCACGCTTTATATGGATGACGGCATGCCGTGCTCTCCACTCTCCATCGAGCGGGTTCCCTCCAGCACCGACACAGAGTACTGGGGCGTCAGCAGTGGAGTTGGAGGCCGTGAAGACAGCCGGGACACGGAAGGAGGAGGGAGCACTAACAGCCGACGGAGCACGCCGTGCACTGAATGCAGAGATTTCCGATTGCGTGGCTCACATCTCCCTGTTCTGACTATAGAGCCGCCCAGTGACAGCTCTGTGGACATGAGCGACCGATCAGATCGAGGGTCCCTTAGCAGACAGCTGCTTTACGAACAGGAGCCAACTGCAGGCGGGTCACCTCAAGGGACCCTCAAACACAACCCTGCACCTCGCATGCCCAATCCTTGTGCGGCACAGGGCCAGACACGACCCACAGGACGCCCAATCCCATCGCCTCTGCCTACACACTTACCACACCATGCTATGATGCACCACCATCACCATCCGCACCTTCACCATCCACTGCACCACCACCCTCTGCCACACATGCATCACCCCTACCCAGATCCCACTTCCCCCTCACCCACTCAGCCTCCGCTCACGCCCCTTTCCTCCTCGTCCTCCGCGCCGCTGCCTGCTTCTGGCATGGAGCAATCAGATGGGGACAATGACTCACTGAACTCCACCACCAACTCCAACGAAACCATCAACTGCAGCTCGGGCTCCTCGTCCAGGGACAGTCTGAGGGAACCATTGCCCCCTCTAGGAAAACAGACATATCAGAGGGAGAGCAGGCACAGCTGGGATTCGCCTGCTTTTAATAATGATGTGGTGCAGAGAAGGCATTACCGCATTGGACTCAACCTCTTCAACAAGAAACCAGAAAAGGGCATCCAGTATTTGATAGAGAGAGGTTTTGTTTCAGACACACCTGTGGGTATCGCACGCTTCATCCTAGAGAGGAAAGGCCTAAGCAGACAGATGATTGGCGAGTTTCTGGGAAACCGACAGAAACAGTTTAACAAGGATGTGTTGGACTGTGTGTTGGATGAAATGGATTTCTCTGGCATGGATTTGGACGATGCCTTGAGGAAGTTTCAGGCTCAGATTAAGGTTCAGGGTGAAGCCCAGAAGGTGGAGAGATTAGTGGAGGCCTTCAGCCAGAGATACTGCGTGTGCAACCCTGCGCTTGTCCGTCAGTTTCAGAACCCAGACACAATCTTCATCTTGGCATTTGCCATCATCCTCCTCAACACAGACATGTACAGCCCCAATGTCAAAGCTGAGAGGAAAATGAAGCTGGAGGATTTTATCAAGAACCTTAGAGGAGTGGATAATGGACAGGACATTCCCAGGGATTTGTTAGTGGGCATCTACCAGCGCATTCAGAAATGGGAACTCAGGACAAATGATGACCATGTTTCTCAAGTGCAGGCTGTGGAGAGGGTCATAGTTGGAAAGAAGCCCgtGCTCTCTCTGCCTCACCGCAGGCTTGTGTGCTGCTGTCAGCTGTATGAAGTCCCAGACCCCAATCGACCCCAGCGGAGTGGAGTTCACCAGCGGGAGGTCTTCCTCTTTAATGACCTGCTAGTGGTAACGAAGatctttcagaagaagaagacGTCTGTTACGTACAGTTTCAGACAGTCTTTTCCCCTGGTGGAGATGCAGGTTCATATGTTCCAGAACTCCTacTATGCTCATGGTATCAGACTGACATCAGCAATGCCGGGTGCCGAGCGTAAGGTCCTGATTGTGTTTAATGCACCGAGCCAACAGGACCGAACGCGATTCACCAGCGACCTGCGAGAGAGCATCGCTGAGGTGCAGGACATGGAGAAATACCGTGTAGAGTCTGAGTTAGAGAAGCAGAAAGGTGTGATGCGTCCAGGGCTCTTGAGTGGGGAAGTGAGCAGCGTCGGTGGAATGAAAACTGAGGCTGTGAACGGCACTCTTGGAAGGCCCAGCCTGGATGACACATATGCTGCAGGAGAGGGCCTTAAACGGACGGCGCTTAGTTCTTCACTGAGAGACCTCTCTGATACGGGAAAGCGAGGCCGTAGAAACAGCGTTGGCTCTTTGGATAGTACCATTGAAGGATCCATCATTAACAGTCCTCAGCCGCATCAACGCTTACCCATGGGGGGTGCCGTTCCCGGCTGCTACGGGCTGGAAGACTACCGGCCTCACCGCCCCATCCTGAGCCCCGGAGTAGGGGTGGGGGGTGGGCCGGGGCAGCTTCACAATGCAGTAGGCAATATGGTGGGGGGCTCTGGCACCAGCGATCGAGGTGGGGGGCCGGGGAGCAGTTCTGGAGGGAGCAATTCCGGTTCATTCCTGGGCTCCCTGTTTGGGAGCAAGCGCGGCAAACCCCCTGCTCCCCTTATTCCCCCCGGGCCACACTACCCAGCCCCCGTACGACCTCCTACAACAGGAGGACCTCCGCCTCCTTCTCCCTCCGCCCTCAGCCAGTCAGATCCCGGTGGGCCATCCAAGATTCAAGCGCTCCACGCTCAGTACTGTCACAACAACTTTGGCCAGCCACCACCCCCCTACCACCATCACCACCGATACCACATGCAAGTGGGCGCCCCTGGCCATCCTCCTGCTATGCATCCCCCCAACATCCATCCTCCCGCCATGCATCCGCCCAATATTCATCCTCCCGCTATGCATCCACCCAACATCCATCCTCCCGCTATGCATCCACCCAATATCCATCCTCCCGCTATGCATCCACCCAATATCCATCCTCCCGCTATGCATCCACCCAATATCCATCCTCCCGCTATGCATCCAACCAATATGCATCCTCCCTCTGTCCATCCTCCCTCTATGCACCCTCCCTCAGGCCATCCTCCCGCTATGCACCACACGCTACAACGAGGGTCCCTCCCAAGGCGTGGACCGGCCGCTCCCTCGCACCCCCAGCTCCAGCAGCAACTGTCCCACCACGCTATGCAGCAAGGCCGCTATGGCAACATGGCCTGCACCCCTCCGCCTCTGTCCCCGCATTCACCCCATTCTCCCGTCGGCCCTTTCAACTTCTACCACGTGCACGGAAATCCCATACGCCTCGCACGAGTGCCTGGACCTACAGGCAAGCTTCCTCTTACCCTGTCTCACTCTCAGCCCCACCCTCACGCCCACTCCCACGGTCACTCTCATACCCACAACCATCTCGTCCACGTCCACAGTCCCCACCCCGAACTCCATCACTCCGGCCAAACTCACTTCGTTTTCTCACCGCCCCCTCAGGCACCATCCGCCATCACAGCCCGGCACATACCGCAGGGCGTCTCTCACTACATACCACAGTATCCGCCCCTATCATCCATCCCACCTCCCCCACCACACTCCCCATTACCTCCTCCATCGTCCCCACATACCCCTCTCACGCCTCTCACCCCGCTCTCCCCGCTGGCCCCACAGCTCCCTGGACCCATGGGGGCGCAGTCGGGCGGCCCAGGGGGCGGAGGAGGAAGTGGAGCCAGCAACAGCAGCACGGTCGGCAGCTCCAAATCCAAGCCTATCAACCGTATCAGCACGGTGGTGTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000171891

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072450 lncRNA downstream 143862 22405875 ~ 22474642 (-) True XLOC_036413
TCONS_00072449 lncRNA downstream 184394 22384742 ~ 22434110 (-) True XLOC_036411
TCONS_00072448 lncRNA downstream 190485 22383250 ~ 22428019 (-) True XLOC_036410
TCONS_00071168 lncRNA downstream 275282 22341606 ~ 22343222 (-) True XLOC_036409
TCONS_00071167 lncRNA downstream 275301 22341606 ~ 22343203 (-) False XLOC_036409
TCONS_00072451 lncRNA upstream 122247 22862004 ~ 22867103 (-) True XLOC_036421
TCONS_00072452 lncRNA upstream 381756 23121513 ~ 23123787 (-) False XLOC_036425
TCONS_00072033 lncRNA upstream 394943 23134700 ~ 23136454 (-) False XLOC_036426
TCONS_00072032 lncRNA upstream 394943 23134700 ~ 23136454 (-) False XLOC_036426
TCONS_00072034 lncRNA upstream 395925 23135682 ~ 23137249 (-) False XLOC_036426
TCONS_00071181 mRNA downstream 59731 22544290 ~ 22558773 (-) True XLOC_036417
TCONS_00071176 mRNA downstream 76037 22523129 ~ 22542467 (-) False XLOC_036416
TCONS_00071174 mRNA downstream 79391 22523129 ~ 22539113 (-) False XLOC_036416
TCONS_00071189 mRNA upstream 22097 22761854 ~ 22838364 (-) False XLOC_036419
TCONS_00071190 mRNA upstream 22884 22762641 ~ 22838364 (-) False XLOC_036419
TCONS_00071191 mRNA upstream 24558 22764315 ~ 22838364 (-) False XLOC_036419
TCONS_00071193 mRNA upstream 26699 22766456 ~ 22826996 (-) True XLOC_036419
TCONS_00071195 mRNA upstream 222933 22962690 ~ 22964486 (-) False XLOC_036422
TCONS_00071180 other downstream 79554 22536028 ~ 22538950 (-) True XLOC_036416
TCONS_00071179 other downstream 79828 22533571 ~ 22538676 (-) False XLOC_036416
TCONS_00071166 other downstream 276183 22341606 ~ 22342321 (-) False XLOC_036409
TCONS_00071164 other downstream 291801 22320847 ~ 22326703 (-) False XLOC_036408
TCONS_00071158 other downstream 331293 22284294 ~ 22287211 (-) False XLOC_036407
TCONS_00071192 other upstream 26699 22766456 ~ 22783222 (-) False XLOC_036419
TCONS_00071194 other upstream 104943 22844700 ~ 22845798 (-) True XLOC_036420
TCONS_00071201 other upstream 382394 23122151 ~ 23122372 (-) False XLOC_036425
TCONS_00071202 other upstream 383005 23122762 ~ 23122874 (-) True XLOC_036425
TCONS_00071249 other upstream 2303444 25043201 ~ 25044808 (-) True XLOC_036463

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_00601570_00615159.mRNA True 3192 mRNA 0.57 14 CI01000010 601570 ~ 615159 (-)