RNA id: TCONS_00071181


Basic Information

Item Value
RNA id TCONS_00071181
length 2089
RNA type mRNA
GC content 0.45
exon number 13
gene id XLOC_036417
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 22544290 ~ 22558773 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCGGCTCTGCGCAGGAAGTGAACGGGGAGCGCGCGCGCTGGAATCAAGTTTGGTTGAACTCCGGTATGTTTATTTTTACACGACAGAGGTTGCGTTTCTCCACTGAGTGTTGCAGATGTTTATGATCTCGCTAACGGGATGGAAAGAACACCTGGATAAGCTGGACGACACGTTTCACTGGAAAAATCCTCATCCTACTTCTGGGTGTGAGCTTGTGCTGCTGCTGGAGATCGACACCAGCTGTGTGTAACAGTGTTCCAGAGACATCACTATGGATTCCTATGGGCGTATGGAGTTCCTGCAGGCTTTAGTGGAGGGCTGTGTGTTGCCCACTGCCCTGCAGGGTCTTGAGCAGGTCTGGCAGCTTCTGCTGGTCTGCCTGCTGTGTCGGGTCATCTGTAGACTAGGTGTCTCGTGTCATGTGAAGCATCTGAGCTCGCTGGCAGGCGGTCTTTATGTGCTCTACGTGTTTTTCGAGATGCACACGATGTGGGTGATCATCCTGAGCCTCCTCTGCTACCTCATTCTGCTCCTCAGCATCAACTCCAGCAGCCGAGGGGTTTTCCTCTCCCTCGTCATCCTCATTTACATGCTGATGGGGGAACTACACATGATAGATGCAGCGACCTGGCATAAGATGAGAGggtCCCAGATGGTGGTGGCCATGAAGGCCATCTCTCTAGCCTTTGACCTGGATCGAGGCGCTGTGTCCTCCTTTCCCACCCCGCTGGAATTCATGGGATACCTCTTCTTTGCAGGAACAGTCATCTTTGGCCCATGGATTAGTTTTGCCCGCTACATAGATGCAATTAATGGCCGTAAAATgAGCATTGCCTGGTTGGGAAAGATTTCTCAGAGCTTTCTGAGTGGTCAGATCTGCCTGGTTATTTCCACCTGTATTGCTCCTTATCTCTTTCCTTACTTTATTCCCATCTACGGAGACGGACATCCTCGAAGGTGGCTTCACGCTTATGAAAATGCCTTGTCTTTTCACTTTAGCAATTATTTTGTCAGTTACTTAAGTGAAACAACAACTGTGATGGCAGGAGCGGGATTCACTGAACACAAAGACCACCTCAAATGggATATTACAGTAGCCAAACCTATGAATGTGGAATTGCCAAGGTCTATGGTGGAAGTCGTCACGTCCTGGAATCTTCCAATGTCTAAGTGGCTCAATGCATatgtttttaaaagcgcaCTCAAACTCGGCACTTTCCCTGCCATCTTGGTGACCTACACAGCCAGTGCGTTGTTGCATGGTCTCAGCTTTCATCTGGGGGCTGTACTGTTGTCTTTGGGATTCATCACATATGTTGAACACGTTCTGAGAAAGCGCTTGGCTGCTATTTTCAGTGCTTGTATACTGTCAAAACGCTGCCCAAGTGACTGCCATCACCAAAACAAGAAGACTGTGTGGGTTTATGTTGTAAACCTGTTCTTCAGTGCTCTGTCAATATTCCATTTGACTTACTTGGGATCATTATTTGACTCTGAAATGGATGAAATGCACGATGAGGAGGGCTACATGGCCAGTCACACTATTCAGAAGTGGTCGGAGCTAAACTGGGCGAGCCATTGGGTGATGTTAggctgttttgtgttttattggctcatttaaaaaaattgccaCATTGTTTTTATAGCATTGAGCAGTCAAAGGACCATTCGCTGAACCTGATGTTGAATGATGACTGAAATATCAAAGACTGCAATAATCAACAGTCAGCATTTCCTCGTTCACCCGTCTGACCCTCAAGTGGAGAAAGTGCCTTATGATTACAAGAATTATTTTTGTCATCATGTGGtcatactattttttatttttttccattggaATTTTGCTTGAGCAATAGGAGAAATATCAGTGTGTAGAGTTCATATTAcaagtgtttttctttctttctgtataTGGctcaatatacagtataaataataGCTTCTTTCAATAGGAACGTTGTTGTTTTCGCTTTTACAGTTGAACATGCGTAAATCTGAAaacatgtttcatatttttactgaAAGGTGTAGATTAGCTctgacaaaaatatttattattttctaataaaaattGCCAACATGACTATT

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0030258 lipid modification biological_process
GO:0061355 Wnt protein secretion biological_process
GO:0018345 protein palmitoylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:1990698 palmitoleoyltransferase activity molecular_function
GO:0017147 Wnt-protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5931 Predicted to enable Wnt-protein binding activity and palmitoleoyltransferase activity. Predicted to be involved in several processes, including Wnt protein secretion; canonical Wnt signaling pathway; and protein palmitoylation. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and membrane. Is expressed in brain.

Ensembl:

ensembl_id ENSDART00000074309

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072450 lncRNA downstream 69648 22405875 ~ 22474642 (-) True XLOC_036413
TCONS_00072449 lncRNA downstream 110180 22384742 ~ 22434110 (-) True XLOC_036411
TCONS_00072448 lncRNA downstream 116271 22383250 ~ 22428019 (-) True XLOC_036410
TCONS_00071168 lncRNA downstream 201068 22341606 ~ 22343222 (-) True XLOC_036409
TCONS_00071167 lncRNA downstream 201087 22341606 ~ 22343203 (-) False XLOC_036409
TCONS_00072451 lncRNA upstream 303231 22862004 ~ 22867103 (-) True XLOC_036421
TCONS_00072452 lncRNA upstream 562740 23121513 ~ 23123787 (-) False XLOC_036425
TCONS_00072033 lncRNA upstream 575927 23134700 ~ 23136454 (-) False XLOC_036426
TCONS_00072032 lncRNA upstream 575927 23134700 ~ 23136454 (-) False XLOC_036426
TCONS_00072034 lncRNA upstream 576909 23135682 ~ 23137249 (-) False XLOC_036426
TCONS_00071173 mRNA downstream 1745 22521729 ~ 22542545 (-) False XLOC_036416
TCONS_00071176 mRNA downstream 1823 22523129 ~ 22542467 (-) False XLOC_036416
TCONS_00071175 mRNA downstream 5177 22523129 ~ 22539113 (-) False XLOC_036416
TCONS_00071174 mRNA downstream 5177 22523129 ~ 22539113 (-) False XLOC_036416
TCONS_00071178 mRNA downstream 5702 22531006 ~ 22538588 (-) False XLOC_036416
TCONS_00071182 mRNA upstream 8590 22567363 ~ 22739757 (-) False XLOC_036418
TCONS_00071183 mRNA upstream 59731 22618504 ~ 22639794 (-) False XLOC_036418
TCONS_00071184 mRNA upstream 59731 22618504 ~ 22660678 (-) False XLOC_036418
TCONS_00071185 mRNA upstream 59731 22618504 ~ 22739757 (-) False XLOC_036418
TCONS_00071187 mRNA upstream 63733 22622506 ~ 22642724 (-) False XLOC_036418
TCONS_00071180 other downstream 5340 22536028 ~ 22538950 (-) True XLOC_036416
TCONS_00071179 other downstream 5614 22533571 ~ 22538676 (-) False XLOC_036416
TCONS_00071166 other downstream 201969 22341606 ~ 22342321 (-) False XLOC_036409
TCONS_00071164 other downstream 217587 22320847 ~ 22326703 (-) False XLOC_036408
TCONS_00071158 other downstream 257079 22284294 ~ 22287211 (-) False XLOC_036407
TCONS_00071192 other upstream 207683 22766456 ~ 22783222 (-) False XLOC_036419
TCONS_00071194 other upstream 285927 22844700 ~ 22845798 (-) True XLOC_036420
TCONS_00071201 other upstream 563378 23122151 ~ 23122372 (-) False XLOC_036425
TCONS_00071202 other upstream 563989 23122762 ~ 23122874 (-) True XLOC_036425
TCONS_00071249 other upstream 2484428 25043201 ~ 25044808 (-) True XLOC_036463

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_00553512_00562038.mRNA True 1509 mRNA 0.48 13 CI01000010 553413 ~ 562038 (-)