RNA id: CI01000010_00553512_00562038.mRNA


Basic Information

Item Value
RNA id CI01000010_00553512_00562038.mRNA
length 1509
RNA type mRNA
GC content 0.48
exon number 13
gene id CI01000010_00553512_00562038
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 553413 ~ 562038 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTTTATGATCGTTCTAACGGAATGGAAAAGACACCTGGATAAGCCGGACGACACATTCCACTGGAAAATTTCTCGTGCTACTTCCGGGTGTGAGGTTGTAGCGCAGGATAATTCTGTGCTTCTGGAGATCGACAGTCCCAGTTATCATGCAGGACTTGAAATGACCATTCCAGAATGCTCTGTCCCTGTCAGTCCTAAACTACATACAGCAGGGCTCAAAAACAAGCGTTCTACGGACATTAGTATGGATTCCTATGGACGTGTGGAGTTCCTGCAGGCTCTAGCAGAGGGCTGTGTGCTGCCCACTGCCCAGCAGGGTTTAGAGCAGGTCTGGCAGCTTCTGCTCGTCTGCCTGCTGTGTCGGGTCATCTGTAGACTAGGTGTCTCATGTCATGTGAAGCATCTGAGCTCGCTGGCAGGCGGTCTGTATGTGCTGTACGTGTTCTTTGAGCTGCACACAATGTGGGTGATTATCCTGAGCCTCCTCTGCTACCTCATCCTGCTCCTCAGCATAAACTCCAGCAGCCGAGGGGTCTTCCTCTCTGTCGTCATCCTCATCTACATGCTGATGGGGGAGCTTCATATGATAGATGCAGCAACCTGGCATAAGATGAGAGGCTCTCAGATGGTGGTGGCCATGAAGGCCATCTCTCTGGCTTTTGACCTCGATCGAGGTGCTGTGTCCTCCTTTCCCTCCCCGCTGGAGTTCATGGGATACCTCTTCTTTGCGGGAACCAGCGTTGGCTGGTTTGGAAAGATTGCTCTGAGCTTTCTGAGGAGTCAGATCTGCCTGGTTATTTCCAACTGTATTGCTCCTTATCTCTTTCCTTACTTCATTCCCATCTATGGAGATGGACTTCCTCGTAGGTGGCTTCACGCTTATGAAAATGCAGTGTCCTTCCACTTCAGCAATTATTTTGTCAGCTACTTGAGCGAAACAACCACTGTGATGGCTGGAGCTGGATTCTCTGAGCACAAAGACCACCTCAAATGGCATGGTCTCAGCTTTCATCTGGGGGCCGTGCTGCTGTCTTTGGGATTCATTACTTACGTTGAACATGTTCTGAGAAAGCGGTTGGCGGCTATTTTCAGTGCTTGTATACTTTCAAAGCGCTGTCCAAGTGACTGCCATCACCAAAATAAGAAGACTATGTGGGTATATGGTGTTAACATGTTCTTCAGTGCATTGTCAATATTCCACCTGACATACCTGGGATCACTGTTTGACTCTGAAATGGACAATATGCATGCTGAGGAGTTCACACGGTATTGTTTTAATATCGCGAGAGTTAGCACAGCCCCTCACTACGTAATGTGCCGTGCTGCTTATGGCGGCGCTGGTGACAGTGCTGAAAGCTGTTGGGGACAGGAGAAGAGTTTACTTGCTTTCCAAACGAATTACTACTAAAATCAGCGTTTCCATGGTCGTGATAACCTTAAAATAACAGGAAATTTGGAAATTGTGATTTTCTTTTTTTTGCAGGCCCTGGAAAGCAATTGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69391 lncRNA downstream 50725 486382 ~ 502688 (-) True G60943
TU69400 lncRNA downstream 113497 439195 ~ 439916 (-) True G60952
TU69473 lncRNA downstream 156029 397070 ~ 397384 (-) True G61016
TU69470 lncRNA downstream 167062 385060 ~ 386351 (-) True G61013
TU69469 lncRNA downstream 167669 384872 ~ 385744 (-) False G61013
TU69495 lncRNA upstream 2570 564608 ~ 564828 (-) True G61035
TU69520 lncRNA upstream 16631 578669 ~ 578948 (-) True G61050
TU69521 lncRNA upstream 17006 579044 ~ 579766 (-) True G61051
TU69525 lncRNA upstream 22778 584816 ~ 585087 (-) True G61055
TU69513 lncRNA upstream 34088 596126 ~ 596685 (-) True G61043
CI01000010_00532752_00544586.mRNA mRNA downstream 8827 532617 ~ 544586 (-) True CI01000010_00532752_00544586
CI01000010_00524503_00527976.mRNA mRNA downstream 25437 524399 ~ 527976 (-) True CI01000010_00524503_00527976
CI01000010_00517865_00522058.mRNA mRNA downstream 31355 517512 ~ 522058 (-) True CI01000010_00517865_00522058
CI01000010_00421834_00427873.mRNA mRNA downstream 125270 421237 ~ 428143 (-) True CI01000010_00421834_00427873
CI01000010_00335493_00356496.mRNA mRNA downstream 196917 335440 ~ 356496 (-) True CI01000010_00335493_00356496
CI01000010_00601570_00615159.mRNA mRNA upstream 39532 601570 ~ 615159 (-) True CI01000010_00601570_00615159
CI01000010_00653231_00678240.mRNA mRNA upstream 91147 653185 ~ 679693 (-) True CI01000010_00653231_00678240
CI01000010_00691767_00731442.mRNA mRNA upstream 129729 691767 ~ 731442 (-) True CI01000010_00691767_00731442
CI01000010_00810923_00813645.mRNA mRNA upstream 248409 810447 ~ 813870 (-) True CI01000010_00810923_00813645
CI01000010_00861290_00870510.mRNA mRNA upstream 298442 860480 ~ 871146 (-) True CI01000010_00861290_00870510
TU69515 other upstream 10715 572753 ~ 575511 (-) True G61045
TU70485 other upstream 682431 1244469 ~ 1246018 (-) False G61888
TU70488 other upstream 682431 1244469 ~ 1246018 (-) False G61888
TU70569 other upstream 862387 1424425 ~ 1545051 (-) True G61965
TU71288 other upstream 2967632 3531516 ~ 3531652 (-) True G62599

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00071181 True 2089 mRNA 0.45 13 NC_007119.7 22544290 ~ 22558773 (-)