RNA id: TCONS_00071176


Basic Information

Item Value
RNA id TCONS_00071176
length 2490
RNA type mRNA
GC content 0.48
exon number 19
gene id XLOC_036416
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 22521729 ~ 22542545 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGGCGCTGGTGACAGTGCTGAAAGCTGTTGGGATGAGTTTTGACCCCAGTCTGCTGCATAATAATGGCCATAGTGGCTTTGCCAATGGAACTAGTATGGGAATTCGTGAGACTGGAGTAGTTGAAAAACTGCTCACATCTTATGGCTTCATTCAATGCTCTGAGAGACAGGCCCGTCTCTTCTTCCACTGCTCTCAATATAACGGCAACCTGCAGGAGCTTAAAATTGGAGATGATGTGGAGTTCGAGGTGTCGTCTGATAGGCGCACTGGCAAACCAATTGCAGTGAAGCTGGTAAAAATCAAGGCAGAAATGTTGCCAGAAGAGCGAATTTCTGGGCAGGTGGGGCCTGACTTGCACGCCTCTCCTTTAACTGTGCTGCATGGTTTTATTCATCCAGTAGTGTCAGCTATCCCTTCTCATCTGGATGGGAAGTCTGCACCTGGCCAATTGCCCACAGGCAGTGTGTGTTATGAGAGGAACGGGGAAGTGTTTTATTTGACCTACACCCTAGAAGATGTGGAAGGAAACGTTTCTTTAGATATTGGTGATAAAGTTAGTTTTTACATGGAGACCAACAAGCAtacTGGTGCTGTTAGTGCCCACAACATTGTTTTGGTGCAGAAAAAAGAGTCAAGATGTCAGGGAGTGGTTTGTGCTACCAAGGAGGCCTTTGGATTCATTGAGCGAGGGGATGTTGTGAAGGAAATCTTTTTCCACTACAGTGAGTTTAAAGGAGACCTGGAGGCTTTACAAGCTGGAGACGATGTGGAATTCACCATTAAAGAAAGAAACGGAAAGGAAGTGGCCACAGATGTGAGACTGTTGCCTCAAGGCACTGTTATATTTGAGGACATTAGCATTGAGACCTTCGAGGGCACTGTCAGTAAGGTTATTCCCAAGGTCCCCACAAAGAATCAGAACGACCCTCTTCCTGGGAGAATCAGTGCCAGAATCAATTTTACTGACAAAGAGCTGCTATTTGGGGAGAAGGACACCAAGTCCAAAGTGACGCTGCTTGAGGGCGATCATGTCCAGTTCAATATATCCACTGACCGTCGCGACAAACTGGAGAGAGCGACAAATATTGACATCCTCCCTGACACCTTCCATTTCACAAAGGAGACCCGTGAAATGGGTGTGATAGCTGCCATGCGTGATGGTTTTGGCTTCATCAAATGTGTGGACCGTGATGCCCGGATGTTCTTCCATTTCAGCGAAGTTTTGGAAGAGAGCCAACTGCACATTTCTGATGAAGTGGAATTCACTGTTGTCCCTGACATGCTGTCAGCCCAAAGGAACCATGCTGTGCGGATCAAAAAGCTGCCCAAGGGCACAGTGTCTTTCCACACTCAATCTGAGCTGCGTTTTATGGGAGTGGTGGAGAAAGAAGCCATACCTGCCATCACCATCAAGAACTCCAGCCCCAGCAAGGGCAAAGAGAAGGATGCTGAGGAAGGCTTGATTGCATATGAAGATGTTGGAGTAAAGACCACCCTTCCCTACCATATTAAAGACCTTGAAGGTGGTGTTTATCCACAGCTTGGAGACAAGGTGGAGTTCTCCATCAGTGAAGTAAAACGCACTGGACAGCAAAGTGCTGTGTCCTTCAAGATTCTTAACCGCGCAGTTGGCTCCAAGAGGCTGCTGGGATACATAGCAACTCTAAAGGATAACTTTGGCTTCATAGAAACAGCCAATCACGATCAGGAGATCTTCTTCCACTACAGTGAGGTTTGTGGGGATGTGGATAGCTTTGATCTTGGAGATACGGTGGAGTACACTCTCTCCAAGGGCAAAGGAAACAAAATCAGTGCAGAGAAGGTCACCAAAATTGCCGCTGTGAATGGAGTTGGAGAGGATGTGAGCACTACAGTGTCCCTGGGAAAGGTGGTTCGGCCGCTGCGCAGTGTGGACCCGTCTCAGACTGAATATCAAGGCCTTATTGAGATCACGGAGGATGGGTCCAATAAGGGACAGAGTTATCCTTTCGGCATTGTTGGTATGGCCAATAAAGGTGACTGTTTACAAAAGGGCGAGTTGGTGAAGTTTCAGTTGTGTACGGTGGCACAGACAGGACAAAAGATGGCCTGCAACATCATGCCTCAGCGCAGAGCCCTGGTGGAGTGTGTTAAAGATCAGTTTGGTTTCATCACGTATGAAGTTGGAGAAAGCAAGAAGTTGTTTTTCCACGTCAAGGAGGTGCAGGACAGTCTGGAGCTGCAGGCTGGTGATGAAGTGGAGTTTTCGGTTATCTTGAACCAGCGTACGGGCAAATGTAGTGCCTGTAATGTTCGCAGAGTCAGtgaGGGTCCAAAACCAGTAGCAACACCTCGGCCTGACAGACTTGTCAATCGCTTGAAGAGCATCACTCTGGATGACTCCAACGCTCCTCGTCTCGTCATCATTAGACAGCCTCGTGGCCCTGATAATTCAAAGGGCTTTAGTGTAGAGAGAAAATCCCGCCAGCCTGGTGTTATTGACTGA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8623 Predicted to enable nucleic acid binding activity. Orthologous to human CSDE1 (cold shock domain containing E1).

Ensembl:

ensembl_id ENSDART00000182588

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072450 lncRNA downstream 48487 22405875 ~ 22474642 (-) True XLOC_036413
TCONS_00072449 lncRNA downstream 89019 22384742 ~ 22434110 (-) True XLOC_036411
TCONS_00072448 lncRNA downstream 95110 22383250 ~ 22428019 (-) True XLOC_036410
TCONS_00071168 lncRNA downstream 179907 22341606 ~ 22343222 (-) True XLOC_036409
TCONS_00071167 lncRNA downstream 179926 22341606 ~ 22343203 (-) False XLOC_036409
TCONS_00072451 lncRNA upstream 319537 22862004 ~ 22867103 (-) True XLOC_036421
TCONS_00072452 lncRNA upstream 579046 23121513 ~ 23123787 (-) False XLOC_036425
TCONS_00072033 lncRNA upstream 592233 23134700 ~ 23136454 (-) False XLOC_036426
TCONS_00072032 lncRNA upstream 592233 23134700 ~ 23136454 (-) False XLOC_036426
TCONS_00072034 lncRNA upstream 593215 23135682 ~ 23137249 (-) False XLOC_036426
TCONS_00071171 mRNA downstream 8087 22509508 ~ 22515042 (-) False XLOC_036415
TCONS_00071172 mRNA downstream 8211 22510807 ~ 22514918 (-) True XLOC_036415
TCONS_00071170 mRNA downstream 15074 22499362 ~ 22508055 (-) True XLOC_036414
TCONS_00071169 mRNA downstream 128469 22393908 ~ 22394660 (-) True XLOC_036412
TCONS_00071163 mRNA downstream 196385 22297813 ~ 22326744 (-) False XLOC_036408
TCONS_00071181 mRNA upstream 1823 22544290 ~ 22558773 (-) True XLOC_036417
TCONS_00071182 mRNA upstream 24896 22567363 ~ 22739757 (-) False XLOC_036418
TCONS_00071183 mRNA upstream 76037 22618504 ~ 22639794 (-) False XLOC_036418
TCONS_00071184 mRNA upstream 76037 22618504 ~ 22660678 (-) False XLOC_036418
TCONS_00071185 mRNA upstream 76037 22618504 ~ 22739757 (-) False XLOC_036418
TCONS_00071166 other downstream 180808 22341606 ~ 22342321 (-) False XLOC_036409
TCONS_00071164 other downstream 196426 22320847 ~ 22326703 (-) False XLOC_036408
TCONS_00071158 other downstream 235918 22284294 ~ 22287211 (-) False XLOC_036407
TCONS_00071115 other downstream 1579357 20940459 ~ 20943772 (-) True XLOC_036389
TCONS_00071108 other downstream 1678627 20842134 ~ 20844502 (-) True XLOC_036384
TCONS_00071192 other upstream 223989 22766456 ~ 22783222 (-) False XLOC_036419
TCONS_00071194 other upstream 302233 22844700 ~ 22845798 (-) True XLOC_036420
TCONS_00071201 other upstream 579684 23122151 ~ 23122372 (-) False XLOC_036425
TCONS_00071202 other upstream 580295 23122762 ~ 23122874 (-) True XLOC_036425
TCONS_00071249 other upstream 2500734 25043201 ~ 25044808 (-) True XLOC_036463

Expression Profile

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