RNA id: TCONS_00071163


Basic Information

Item Value
RNA id TCONS_00071163
length 2970
RNA type mRNA
GC content 0.49
exon number 22
gene id XLOC_036408
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 22297813 ~ 22326744 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAGAACGATCGAAATAACCTGCGCATGCGCACATGCCACAGTTGTCAAACGGTGGTTATGGAGATGAATGTGGGCAACTGCTATATTTGGAGCTCAGGACTGGGATGCCTCATAAGATAGGCTTCTCTGTGATCAGCTGGTCTGGTCATGAAGGAAACTACAATGCCAAAAAGCTGATGGTCCATGCGCCCACCGTCAGTGGCTGGAGATCTACTAGGTTTTGTCCATTCCCTCAGGAAATAATTCTGCAGTTGGCCGAGAGATGCCGCATCAGGAAACTCCAGCTCCTGGCCCATCAGTACTTCATCCCGTCCAAGGTGGAGTTCCATGTTGGAGACATGCTGCCTGAGTCCAACTCAGCCCAGCAGGCTCACAGTCTCCATAGACTGGGGTATGTTTCTCTCTCTGACAATGAGAAGACTGGGTTCAGAGCCAGAGAGCTGAAGTCAGTTCATGTTGATGCTGTTGGGTCTTTCCTGAAGCTTACCTTTCACAGAAACCATGTTAATCAATACAATGTCTACAATCAGGTTGCGTTGGTGGCTCTAAATATTTTGGGTGACCCTATAGATGGAAGTGACATTGGAACAACACTAAGCAGAGATCATCTGATTGATCAATTTCTGAACAGCAGCCAGTACAGTTCCTCATTGGATGGCACTTACACAGGGCTCTCAAGTTATAAATGTGAATCCATCTCGCCGCTGGATGACTTGGCTTTTGACATGTATCAGGACCCTGAGGTGGCCCATATCATTCGCCTGCTAGACCAAAAAAAACAGGTCATGGTTCGAGAGGAAAGATTTGATTCGGCCAAAGAACTCAAACAAGCTATTGCTGACCTGCAAAAGGTGGGCGAACGGTTGGGCCGGTATGATGTGGAGAAACTCAGTGCAATAGAACGAGAGGACTATGACACAGCCAAGCAGAAAAAGGAACAAATGGATGCTTACAGACTCGCAGTCTACCATCAGCTGGAGATCCATAACCTGCTGGACATCAGTCAGATACACAGAATGTCTGGACTTTCTGACTCTGGATTTCTCTCTCCACGAGTGGGGACACAGAAACACATGCCTCATCCACCTGACACACATAGAAAGAAGAGACAAGGACCTGTGAAGGACACAGATGAGCAGGACACTTCAAAAACAACTAGTCCCAAGCATACCATCCCCTCAACCCCCTTCACCCCTCCTCACGTCTCCAAGATTGATATTAATTCTCTTCCTTATGACGAGAGGCCTTTGCCAACTCTCAGGAACAGGTTGAgtgatcagtcagtcagtgagcTTGATGAGATACTTCCTCTGGCAGACACAGCCTCTCCACGTAGCCCTCGGGCATCAGGACAACCAGAAGAGCTCACAGAAAAAGCTCAGAGAGAGGCCAGTCTGCCCATTGAAATATATGGAGAGAGTCTGGTGGCAGGAGCCTATTCCAAGACATGGTCCTACAGAGAGGATGCTTTGCTGGCAGTCCGCAAGAAACTGATGGAGGTCCCGTCTGGAAGCTCAAAAGCAGAACTGCGGAGCATGACAAGAGCAGCTGTGTTCCTCTGCAAGAAGGCCCTCACAGATAAAGTGTCATCAGTGTTTCTTGCATCTCTGAATCTGCTTAAAACGATTTTAAGTGAGTTTATTCCCAACCATCAGCTGGGCAAATCTGAAATCAGTCACTGCGTGGAACAGACTTGGAACAATCTGATCTCCAGAGCCGGAGACTCCACTTCGAGACTCAGAACGCCGGCTATCACCTTCATACAGGAAATGGCCTTGTTTAAGGAGGTGAGAGCGCTCCAGATGGTTCCTGTGGAGCTGGTCAGACCCATGCAGAGCAGTGTGCCCGCTAGACAGGCACTGAGCAGACTGGAACTGATTGAGAAGCTTCTAGAACAGCTGGGCACCAAGGACTCTGGCTTCACCCTTGACAGCATCATGCGGTTTCTGACAGGTGGATTGGAGCACAGCTCTGCCTCTGTGAGGGAACTTTCCATGAGACTCATCCAGACTGTGTACCGTCTTCATGGTAAACCAGTTCTGAATTATCTGCCACCTGATGACTCCAGCACACGTAAAAACGTCCTCTACAAGAACCTTTTTGACTCGCTTGCAAAGTTAGACGGAACAACCATTAACACACAGAAGTCAAAAAAGGGAGCAGAACGAGACGAAGGTGAGAGGGAGAAAGAGGAAATAAGGAGCTTACAGGAGCAGCTTGCAGTGCTGAAGGAGATCAGTGAGAAAGGGAAGGACAATGCCAAAGTACCTGAGAAAAAAACAGAGAAGGCAACCAAATCAGGTGCAAAGAAGGTAAACCAGTCTGTCTCTGGTGATGTAAAAGCCAGTCAATCATCTGCTGTAAACTATTTAGACAAtctGTGTATTTTCTGTGGGGAGAGAGATGAGTCTTTCACTGAGGATGGACTCGACCTGCACTACTGGAAACACTGTCCAATGCTCCAGCGCTGTCTTCAATGCAGACAGGTGGTTGAGATTGCGAGTTTGACAGAGCACTTGCTGACAGAGTGTGAGCGGAGGACAGATTTCTCCCAGTGTCCCCTCTGCTCTGAAGCCCTCATGCGAGATAAGCTAACGGAACATGCTCAGAGCACTGCTTGCAATCGTGAGTCTCCATTGTGGGcCCCATCTTCTGATGAAAATTGCAACCACTGTCCTCTGTGTCATGAAAACTTCACATCAGGGGAGGAGGGCTGGAAGTCTCACCTCATGGGACCAGAGGGCTGTAAACACAACTCACGGAGGAGAGCGATACAGCCTAGCACTTACTCATATGCACAAGGAAAGTCAGTAAACACAGCTGGAGGTAAAACAACAATGGTCATTTCTGAGTCTAAGGCTAGAGGGCTGGGAGGAGGCAGTCGCATCCCTGCTCCAGCATCCAGAATGAAGAGACGCAGCAGAAATCCTCCAGACAAGGCCTCTACATACCGACTTCAACAGGCGTAA

Function

GO:

id name namespace
GO:0021545 cranial nerve development biological_process
GO:0060271 cilium assembly biological_process
GO:0001947 heart looping biological_process
GO:0005929 cilium cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-060503-195 Acts upstream of or within cilium assembly; cranial nerve development; and heart looping. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in Joubert syndrome 25. Orthologous to human CEP104 (centrosomal protein 104).

Ensembl:

ensembl_id ENSDART00000137645

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071161 lncRNA downstream 9787 22286534 ~ 22288026 (-) True XLOC_036407
TCONS_00071159 lncRNA downstream 10440 22284294 ~ 22287373 (-) False XLOC_036407
TCONS_00071148 lncRNA downstream 384516 21852129 ~ 21913297 (-) False XLOC_036405
TCONS_00071149 lncRNA downstream 384516 21912380 ~ 21913297 (-) True XLOC_036405
TCONS_00072031 lncRNA downstream 384857 21819292 ~ 21912956 (-) False XLOC_036405
TCONS_00071167 lncRNA upstream 14862 22341606 ~ 22343203 (-) False XLOC_036409
TCONS_00071168 lncRNA upstream 14862 22341606 ~ 22343222 (-) True XLOC_036409
TCONS_00072448 lncRNA upstream 56506 22383250 ~ 22428019 (-) True XLOC_036410
TCONS_00072449 lncRNA upstream 57998 22384742 ~ 22434110 (-) True XLOC_036411
TCONS_00072450 lncRNA upstream 79131 22405875 ~ 22474642 (-) True XLOC_036413
TCONS_00071156 mRNA downstream 9552 22283564 ~ 22288261 (-) False XLOC_036407
TCONS_00071160 mRNA downstream 9555 22284496 ~ 22288258 (-) False XLOC_036407
TCONS_00071157 mRNA downstream 9809 22284234 ~ 22288004 (-) False XLOC_036407
TCONS_00071153 mRNA downstream 23591 21978618 ~ 22274222 (-) False XLOC_036406
TCONS_00071155 mRNA downstream 23994 22228027 ~ 22273819 (-) True XLOC_036406
TCONS_00071169 mRNA upstream 67164 22393908 ~ 22394660 (-) True XLOC_036412
TCONS_00071170 mRNA upstream 172618 22499362 ~ 22508055 (-) True XLOC_036414
TCONS_00071171 mRNA upstream 182764 22509508 ~ 22515042 (-) False XLOC_036415
TCONS_00071172 mRNA upstream 184063 22510807 ~ 22514918 (-) True XLOC_036415
TCONS_00071173 mRNA upstream 194985 22521729 ~ 22542545 (-) False XLOC_036416
TCONS_00071158 other downstream 10602 22284294 ~ 22287211 (-) False XLOC_036407
TCONS_00071115 other downstream 1354041 20940459 ~ 20943772 (-) True XLOC_036389
TCONS_00071108 other downstream 1453311 20842134 ~ 20844502 (-) True XLOC_036384
TCONS_00071106 other downstream 1459791 20832584 ~ 20838022 (-) False XLOC_036383
TCONS_00071104 other downstream 1882852 20414846 ~ 20414961 (-) True XLOC_036381
TCONS_00071166 other upstream 14862 22341606 ~ 22342321 (-) False XLOC_036409
TCONS_00071179 other upstream 206827 22533571 ~ 22538676 (-) False XLOC_036416
TCONS_00071180 other upstream 209284 22536028 ~ 22538950 (-) True XLOC_036416
TCONS_00071192 other upstream 439712 22766456 ~ 22783222 (-) False XLOC_036419
TCONS_00071194 other upstream 517956 22844700 ~ 22845798 (-) True XLOC_036420

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_00335493_00356496.mRNA True 3034 mRNA 0.49 22 CI01000010 335440 ~ 356496 (-)