RNA id: TCONS_00071157


Basic Information

Item Value
RNA id TCONS_00071157
length 918
RNA type mRNA
GC content 0.50
exon number 4
gene id XLOC_036407
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 22283564 ~ 22288261 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCGGTTTTGGACGCCTAAACTTTCAATGAGGGCGAAGCAGACTGTCGTTGTGAGCCTCGGACAGCGAGTGTGCGGCGCTGTCTCTTTAAACCCGCCCGGTGTGAAAAGTTCAGTCAAGGCGGCAAAGAGGAGAGTTCTGCTGCAGAGATCGGCGCCTGATATCGCGCGCGCTGTGCGACAGATGGCTGGCGACGGCGGCGAGGCCAAGCGGCTCCCGAAGAGACCCTTTCACGGCGAAGTAGAGGAGAACTCAAGCGCGGCTGTGGATGGAAACGTTAAAATTCAGCCCGGGAAAAAGGCTCCTGGTGAACGGCGTGGTAAGGAGAACTCCGCCGCCAAGTGCACGGGTTTGACAAGCGGCTCCGCAGAGGCGAAGATGGAGCAGAGCGTTCACGGCTCGCAGACCACAGACCCGAGCGTTTTCTTCGACGAGGACAGCAATCATGTTTTCCCTGTGGAGCAGTTCTTTGGGAACCTGGATGTTGTTGAGGATTACCCCCGCAGAACTCCAGGCAGCAAAAGAATGACCCGGAGAGAGTACAGGAGCATGCATTACTATGCCAAAGAGGACAGTGAAGAAGAGCATCTATGAGGACTAAATCACTTCAGCTGCCGCTTGCAGGAGTACAAATGACTGAAGAAGCGTCATGCTGGTAAAATGGacttgatttgttttaaaacaagctATTTTATTCTCTTAACAATAGAGATGCCCTGTGTTGTTCAATCGGTAATGAGGCACATTATAATCAAATGCAGAAATCCTGTGCATCCCTAATTATAAACTTAAGAGCATTCATTCAAGTGCTGCACTAAAAGAATGTACAGTAAAAGGTTTTATGTGAGATTTCTGGTTTAAAGCATCATGTGATTTGTCCCGAAAGAAGGCTATTTAAGGAAAACTTGCGTACAAGTG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-102 Predicted to be located in nucleus. Orthologous to human C1orf174 (chromosome 1 open reading frame 174).

Ensembl:

ensembl_id ENSDART00000100042

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071147 lncRNA downstream 370937 21723326 ~ 21913297 (-) False XLOC_036405
TCONS_00071148 lncRNA downstream 370937 21852129 ~ 21913297 (-) False XLOC_036405
TCONS_00071149 lncRNA downstream 370937 21912380 ~ 21913297 (-) True XLOC_036405
TCONS_00072031 lncRNA downstream 371278 21819292 ~ 21912956 (-) False XLOC_036405
TCONS_00072447 lncRNA downstream 781578 21436215 ~ 21502656 (-) True XLOC_036404
TCONS_00071165 lncRNA upstream 37312 22325316 ~ 22326696 (-) True XLOC_036408
TCONS_00071167 lncRNA upstream 53602 22341606 ~ 22343203 (-) False XLOC_036409
TCONS_00071168 lncRNA upstream 53602 22341606 ~ 22343222 (-) True XLOC_036409
TCONS_00072448 lncRNA upstream 95246 22383250 ~ 22428019 (-) True XLOC_036410
TCONS_00072449 lncRNA upstream 96738 22384742 ~ 22434110 (-) True XLOC_036411
TCONS_00071151 mRNA downstream 9725 21978057 ~ 22274509 (-) False XLOC_036406
TCONS_00071150 mRNA downstream 9725 21978057 ~ 22274509 (-) False XLOC_036406
TCONS_00071153 mRNA downstream 10012 21978618 ~ 22274222 (-) False XLOC_036406
TCONS_00071155 mRNA downstream 10415 22228027 ~ 22273819 (-) True XLOC_036406
TCONS_00071154 mRNA downstream 126933 22151939 ~ 22157301 (-) False XLOC_036406
TCONS_00071162 mRNA upstream 9809 22297813 ~ 22326073 (-) False XLOC_036408
TCONS_00071163 mRNA upstream 9809 22297813 ~ 22326744 (-) False XLOC_036408
TCONS_00071169 mRNA upstream 105904 22393908 ~ 22394660 (-) True XLOC_036412
TCONS_00071170 mRNA upstream 211358 22499362 ~ 22508055 (-) True XLOC_036414
TCONS_00071171 mRNA upstream 221504 22509508 ~ 22515042 (-) False XLOC_036415
TCONS_00071115 other downstream 1340462 20940459 ~ 20943772 (-) True XLOC_036389
TCONS_00071108 other downstream 1439732 20842134 ~ 20844502 (-) True XLOC_036384
TCONS_00071106 other downstream 1446212 20832584 ~ 20838022 (-) False XLOC_036383
TCONS_00071104 other downstream 1869273 20414846 ~ 20414961 (-) True XLOC_036381
TCONS_00071084 other downstream 2970819 19296162 ~ 19313415 (-) False XLOC_036367
TCONS_00071164 other upstream 32843 22320847 ~ 22326703 (-) False XLOC_036408
TCONS_00071166 other upstream 53602 22341606 ~ 22342321 (-) False XLOC_036409
TCONS_00071179 other upstream 245567 22533571 ~ 22538676 (-) False XLOC_036416
TCONS_00071180 other upstream 248024 22536028 ~ 22538950 (-) True XLOC_036416
TCONS_00071192 other upstream 478452 22766456 ~ 22783222 (-) False XLOC_036419

Expression Profile

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