RNA id: XR_005637409.1


Basic Information

Item Value
RNA id XR_005637409.1
length 385
lncRNA type inter_gene
GC content 0.48
exon number 5
gene id LOC120549593
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 1298401 ~ 1299167 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCATAAGAAGCAATTTATTGAGCCTGAGCCATACCAGAAAGGCTTCCCGCCCAAAAGACGCAACCATTCCTTTGTTCCGGTTTCATCTTACCCGgccactgtatcttatgatcctaacacagttgcagagcAACTAAAGGCTACGGAAGACTTAGTTTCATTGTATTTGACGCCTGAGGACGATTTCACACAGCCACCCCCATGGAGCAGAAACGGATGTCTACACAAGCCTAAGAAGGGATCTAAGAAGAGATCTATTGAgCCTGAGCCATACCAGAAAGGCTTCCCGCCCAAAAGACGCAACCATTCCTTTGTTCCGGTCTCATCTTACCCGgccactgtatcttatgatcctaacacagttgcagagcaaGTAACGACGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637410.1 lncRNA upstream 6 1297929 ~ 1298395 (+) True LOC120549594
TU270336 lncRNA upstream 161874 1135925 ~ 1136527 (+) True G199377
TU270334 lncRNA upstream 165047 1133100 ~ 1133354 (+) True G199375
TU270328 lncRNA upstream 180015 1118087 ~ 1118386 (+) True G199369
XR_005637399.1 lncRNA upstream 197285 1099688 ~ 1101116 (+) False LOC120549526
XR_005637270.1 lncRNA downstream 238663 1537830 ~ 1542581 (+) True LOC120548740
XR_005637273.1 lncRNA downstream 238668 1537835 ~ 1542579 (+) False LOC120548740
TU270372 lncRNA downstream 239021 1538188 ~ 1542521 (+) False LOC120548740
XR_005637271.1 lncRNA downstream 239193 1538360 ~ 1542579 (+) False LOC120548740
XR_005637272.1 lncRNA downstream 239193 1538360 ~ 1542579 (+) False LOC120548740
XM_039785381.1 mRNA upstream 296977 996621 ~ 1001424 (+) True LOC120548863
XM_039785914.1 mRNA upstream 640328 656330 ~ 658073 (+) True LOC120549204
XM_039786597.1 mRNA upstream 870866 425361 ~ 427535 (+) True LOC120549579
XM_039785912.1 mRNA upstream 1175848 121003 ~ 122553 (+) True LOC120549203
XM_039786551.1 mRNA upstream 1236231 57972 ~ 62170 (+) True LOC120549549
XM_039785383.1 mRNA downstream 491068 1790235 ~ 1792718 (+) True LOC120548868
XM_039785385.1 mRNA downstream 494713 1793880 ~ 1800729 (+) True LOC120548869
XM_039785386.1 mRNA downstream 519036 1818203 ~ 1819621 (+) True LOC120548870
XM_039785387.1 mRNA downstream 843005 2142172 ~ 2152961 (+) True LOC120548871
XM_039785389.1 mRNA downstream 963026 2262193 ~ 2264878 (+) True LOC120548873
TU270323 other upstream 196997 1099584 ~ 1101404 (+) True LOC120549526
TU270249 other upstream 306389 963109 ~ 992012 (+) True G199306
unassigned_transcript_1125 other upstream 827679 470650 ~ 470722 (+) True trnav-aac_28
XR_005637528.1 other upstream 1032441 265798 ~ 265960 (+) True LOC120550040
XR_005637527.1 other upstream 1033075 265165 ~ 265326 (+) True LOC120550039
XR_005637626.1 other downstream 110857 1410024 ~ 1410142 (+) True LOC120550151
XR_005637719.1 other downstream 111081 1410248 ~ 1410366 (+) True LOC120550347
XR_005637708.1 other downstream 111526 1410693 ~ 1410810 (+) True LOC120550237
XR_005637720.1 other downstream 111748 1410915 ~ 1411033 (+) True LOC120550358
XR_005637744.1 other downstream 111971 1411138 ~ 1411256 (+) True LOC120550545

Expression Profile