RNA id: XM_039785387.1


Basic Information

Item Value
RNA id XM_039785387.1
length 1899
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC120548871
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 2142172 ~ 2152961 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGAACTCACATGGTCCTGATCCTGCTCTCGTCTCCTGTGATCCTGCACTGAACTCACATGGTCCTGATCCTGCACTCGTCTCCTGTGATCCTGgtcctgcactcgactcacatgaTCCTGATCTCGCACGCGTCTCCTGTGCTCCTGCACTTGTGTCGCCTGATCCTGCACTTATTAGTACTATATCGGTCTGTGAAGAACCTCCCCTCTCATTCATACCACCAGTCCACCAAACCTCTACAAACACTTCCTGTGCAAATGGGCAGGTACGGCAAACTGCTACTGTCGAGGATACAAGAAAACAGCATGAGTTGCTACTTCTTGCTTTAAAACTCAAGCATGGACTGACTGATGAAGCTTTAGAAGACACACTTAAAGTTGTTAACGTTATAAGTCAGAGGCATGCTGTGTCATCTACCAAACATCACTTTTACAAAACTTTTGATGACTTGAAAAGAAATATTCAGTTTCACTACATATGTGAGGGATGCACAATTTCTGTAAACATTGACGGAGAAAAAGTGGTTTGTCCTAACTGTCAATATTCTTGTAGTGTAGCCGATCACATGAAACAGGGGCACTTCTTTATTGTTTTTCCACTAGAATCACAATTAAGGAATATGATGGAACAAGAGGAACTCTTCAGCCAGTTGACTAGGCCTAACAGTGGTGCTCACTCTAGCCCACTGACAGATATCACAGATGGTGAGCTTTACAAGAGGGTTAACGGAAATAGTGAAGGCCAATCTGAGCATCAAGTCAATCTCACACTAACCTTTAGCTTTGACGGGGTACCTGTGTTTAAGAAATCTTCTTACAGTATTTGGCCACTTCTCTATACAGTCAATGAATTACCACCTGATCTGAGAGCAAAACAAGTCATGTTGTCAGCCTTATGGTTTGGTTCATCAAAGCCAAACTGTAACACATACTTATCACCATTTGTGAAAGAATGCAATCAATTGCTTACTCATGGGTTTGAGTGGATCAGTGCAAATGGTATTCGTGGCCGTTCCAAAGTATTTCCCTTGGTGGCAGTATGTGATTCTGTTGCAAGACCGATGATTCAAAATTTTAAGCAATTCAATGGAGAATTTGGATGTTCATACTGTTTACAAAAAGGTACAGTGGTTGAGAAGGGTCAAGGTCATGTACGGGTCTATCCTTTTGAGTCTGATACTGAAAGCAGAAATCATGGTAGCAGCCTAAATTTCGCTCGAGAGGCTATAGAAAATCACACTACTGTGAAAGGAGTGAAAGGACCGTCTATTTTGTCCTTGATCCCATCAGTTGACCTGATACAAGGTTGCGTACCTGACTACATGCACGCCTGTCTTCTTGGTGTTGCAAGATCTATGACTTATATGTGGGTTAGAAGTGACAATCATGAAAACCCATGGTATGTAGGAAGGTGTATCCAAGAGATTGATCAAAAACTTCACCTTATCCAACCACCCTCCTGTGTTTCCAGAGTGCCTAGATCACTGCAAGAGAGAAACTATTGGAAGGCGCATGAGTGGTATATGTGGCTTTTCTACTATAGCATCCCAGTGCTTAAAGGGATCTTACCAGAGCGCTATCTAATACACTGGACACGGTTTGTGAAGGCTTTGGCattgctcttaactgaaagtgTCACCTTGCAACAAATTCAGGAAGCAGACATCATGCTTAGGAGATTTGTGATGGAAATGGGGGATCTCTATGGTATACAAAATGTGTCCTATAatgtccatctctctctcaccttgCACAAAGTGTACAACCGGGGAGTGAAGTCTGGTGTGCGGGAGTCAGGGTTCCAGCTGCAGCTCATCTACACTAATCACCTCTGCTACAAATACCCGGTCAACCTACTTACTTCTCCTCGTCAGATCATAGTCAAGACAACACGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637433.1 lncRNA upstream 413 2139562 ~ 2141759 (+) True LOC120549790
TU270550 lncRNA upstream 20009 2121964 ~ 2122163 (+) True G199553
TU270548 lncRNA upstream 32350 2109495 ~ 2109822 (+) True G199551
TU270546 lncRNA upstream 35804 2106072 ~ 2106368 (+) True G199549
TU270533 lncRNA upstream 41738 2098218 ~ 2100434 (+) True G199541
TU270567 lncRNA downstream 42167 2195128 ~ 2195367 (+) True G199570
TU270573 lncRNA downstream 93993 2246954 ~ 2247265 (+) True G199575
TU270574 lncRNA downstream 94549 2247510 ~ 2270865 (+) True G199576
TU270575 lncRNA downstream 112615 2265576 ~ 2265983 (+) True G199577
XR_005637345.1 lncRNA downstream 252815 2405776 ~ 2407264 (+) True LOC120549196
XM_039785386.1 mRNA upstream 322551 1818203 ~ 1819621 (+) True LOC120548870
XM_039785385.1 mRNA upstream 341443 1793880 ~ 1800729 (+) True LOC120548869
XM_039785383.1 mRNA upstream 349454 1790235 ~ 1792718 (+) True LOC120548868
XM_039785381.1 mRNA upstream 1140748 996621 ~ 1001424 (+) True LOC120548863
XM_039785914.1 mRNA upstream 1484099 656330 ~ 658073 (+) True LOC120549204
XM_039785389.1 mRNA downstream 109232 2262193 ~ 2264878 (+) True LOC120548873
XM_039785391.1 mRNA downstream 278345 2431306 ~ 2432865 (+) True LOC120548876
XM_039785901.1 mRNA downstream 314993 2467954 ~ 2470455 (+) False LOC120549189
XM_039785900.1 mRNA downstream 315121 2468082 ~ 2470455 (+) True LOC120549189
XM_039785393.1 mRNA downstream 360550 2513511 ~ 2514641 (+) True LOC120548878
XR_005637481.1 other upstream 258360 1883694 ~ 1883812 (+) True LOC120549988
XR_005637688.1 other upstream 258582 1883472 ~ 1883590 (+) True LOC120550216
XR_005637689.1 other upstream 260559 1881494 ~ 1881613 (+) True LOC120550217
XR_005637586.1 other upstream 260783 1881271 ~ 1881389 (+) True LOC120550109
XR_005637665.1 other upstream 261006 1881048 ~ 1881166 (+) True LOC120550192
TU270561 other downstream 5929 2158890 ~ 2159383 (+) True G199564
TU270658 other downstream 395024 2547985 ~ 2548539 (+) True G199652
TU270700 other downstream 539512 2692473 ~ 2693453 (+) True G199689
TU270958 other downstream 1343119 3496080 ~ 3523889 (+) True G199885
TU271252 other downstream 2888998 5041959 ~ 5053742 (+) True G200129

Expression Profile