RNA id: TU270658


Basic Information

Item Value
RNA id TU270658
length 555
RNA type TUCP
GC content 0.44
exon number 1
gene id G199652
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 2547985 ~ 2548539 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caacacagctcatcaccctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgacactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatccacaatggaatggttcacaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcaaacgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggcaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaacttaagggggctgaataattttgcacgcccaatatttcagttttttatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270656 lncRNA upstream 5352 2542420 ~ 2542633 (+) True G199650
XR_005637343.1 lncRNA upstream 48051 2497469 ~ 2499934 (+) True LOC120549194
TU270634 lncRNA upstream 57355 2490430 ~ 2490630 (+) True G199630
TU270592 lncRNA upstream 122492 2424525 ~ 2425493 (+) True G199593
XR_005637345.1 lncRNA upstream 140721 2405776 ~ 2407264 (+) True LOC120549196
XR_005637341.1 lncRNA downstream 40180 2588719 ~ 2591784 (+) True LOC120549192
TU270665 lncRNA downstream 40180 2588719 ~ 2591518 (+) False LOC120549192
TU270705 lncRNA downstream 150110 2698649 ~ 2699027 (+) True G199694
TU270706 lncRNA downstream 150654 2699193 ~ 2699605 (+) True G199695
TU270710 lncRNA downstream 262164 2810703 ~ 2811103 (+) True G199699
XM_039785393.1 mRNA upstream 33344 2513511 ~ 2514641 (+) True LOC120548878
XM_039785901.1 mRNA upstream 77530 2467954 ~ 2470455 (+) False LOC120549189
XM_039785900.1 mRNA upstream 77530 2468082 ~ 2470455 (+) True LOC120549189
XM_039785391.1 mRNA upstream 115120 2431306 ~ 2432865 (+) True LOC120548876
XM_039785389.1 mRNA upstream 283107 2262193 ~ 2264878 (+) True LOC120548873
XM_039785812.1 mRNA downstream 690084 3238623 ~ 3243462 (+) True yipf6
XM_039785814.1 mRNA downstream 710996 3259535 ~ 3274871 (+) True im:7136021
XM_039785395.1 mRNA downstream 796277 3344816 ~ 3345584 (+) True LOC120548881
XM_039785176.1 mRNA downstream 821260 3369799 ~ 3384604 (+) True ak7b
XM_039786306.1 mRNA downstream 952832 3501371 ~ 3522832 (+) False vrk1
TU270561 other upstream 388602 2158890 ~ 2159383 (+) True G199564
XR_005637481.1 other upstream 664173 1883694 ~ 1883812 (+) True LOC120549988
XR_005637688.1 other upstream 664395 1883472 ~ 1883590 (+) True LOC120550216
XR_005637689.1 other upstream 666372 1881494 ~ 1881613 (+) True LOC120550217
XR_005637586.1 other upstream 666596 1881271 ~ 1881389 (+) True LOC120550109
TU270700 other downstream 143934 2692473 ~ 2693453 (+) True G199689
TU270958 other downstream 947541 3496080 ~ 3523889 (+) True G199885
TU271252 other downstream 2493420 5041959 ~ 5053742 (+) True G200129
XR_005637303.1 other downstream 2551929 5100468 ~ 5187407 (+) False apoba
TU271419 other downstream 3161146 5709685 ~ 5715117 (+) False LOC120549411

Expression Profile