RNA id: XM_039786306.1


Basic Information

Item Value
RNA id XM_039786306.1
length 1508
RNA type mRNA
GC content 0.50
exon number 13
gene id vrk1
representative False

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 3501371 ~ 3522832 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCACGAAGACCCACACCCAACAATGCCTCCTAAAGCCAAGGCGGCAGGCAAAGGCAGAGGTCCAGCTAAGAGGAAGCTGGCAGAGGAGTTCCCCCCCGGTGAAGTCCTAATAGACACTGGGAAGAAGGCCTGGAAGCTGGGGGCTCCAATCGGCCAAGGGGGATTTGGTCTCATATATTTGGCTGATGAGAATTCTGCAAAATCTGTGGGTGCTGATGCTAATTATGTCATCAAAGTGGAGCCCAGTGACAATGGAccactgttctctgagctcaagTTTTACATGAGAGCTGCTAAGCCTGACCTGATTCAGAGCTGGATGAAGTCTAACAAGTTGAAAAGTCTGGGTGTTCCCAGGTACTGGGGCTCAGGCCTGCACGAGAAAGATGGGAAAAGGTATAGGTTCATGGTCATTGACAGGCTTGGCACAGACCTGCAGAAGAAGTTTGAAGAATGTGGAAGGCGGTTCCCCAGAAAACTGGTCCTGCAGCTCGGCCTTCGACTGCTGGATATTCTGGAGTTCATCCACGATCACGAGTATGTGCATGCTGACATCAAGGCATCCAACCTCATGTTGAGCCACAGTGATCCCAACCAGGTTTACTTAGTAGATTATGGGCTGGCATATAGGTACGCACCCGACAGTGTGCTAAAGGAGTACAAGGAAGACCCCAAGAGATGTCATGACGGCACCATTGAGTTCACAAGCATCGACGCCCACAAAGGAGCAACTGCATGCAGGCGGAGCGACCTGGAGATCCTGTGCTACTGCATGGTACAGTGGCTGTGTGGACGCCTGCCCTGGGAGGACAAGCTGCAGGACCCCCTCTATGTCCGAGACTCCAAAATCAGGAGCCAAGAAAACATCTCTGAATTTATGACCAAGTGTTTCTCCTCAGGAGACAAGCCAGATGAGATCCAGAGGTTCATGGAGGAGGTCAGATCTCTGGGATACCAAGACAAACCACCATACGAGAAGTTCCGATCCATCCTGCAGGCCGGACTGAAGGCCATCCAGGCTAAAGATGACGGCAAGCTGAATTTCACTCCCGCCACACCCGTATCACCCCCTGCCCAGAGGGCCACCAAGAGAAAGAAAGCAGCAAATGCAGCAGAAGAGAGTGAGACTGATGGAGGACCcatcaagaaaaaaagagtcacAAAGAAAAGAGAAGTGAATGGAGTGAAGAAAAGTCCCAAAAAAACTCCTACACCAAAGAAGGTACCCAGCACTGGAAAACTGGGTGACCCCAAATCCAGACTGGTGGAGATGGGCACCCAGACTTCACCCGGACTTGCCAAGAAACCCAGAGGCAGACCCAAAAAAGCCAGCGCCTAAACATCCACGTCTGTCTAcactcctccctccatcctctgcCTCTTAAGAGTcactttttcaagttttatATGATTTCTATCTGTTACGCACTTGCTAGATGTTGATGTTTGATTGTATTTGGCGTGGTTGAAGCCACGTCCATTGGAATAAAGAGGAAATTAAATTGTC

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270955 lncRNA upstream 46403 3449558 ~ 3454968 (+) True G199882
TU270918 lncRNA upstream 156779 3337003 ~ 3344592 (+) True G199849
TU270919 lncRNA upstream 163369 3337003 ~ 3338002 (+) False G199849
XR_005637377.1 lncRNA upstream 181033 3318435 ~ 3320338 (+) False LOC120549373
TU270895 lncRNA upstream 181038 3316535 ~ 3320333 (+) True LOC120549373
XR_005637411.1 lncRNA downstream 228058 3750890 ~ 3755742 (+) True LOC120549606
TU271007 lncRNA downstream 289229 3812061 ~ 3812316 (+) True G199924
TU271025 lncRNA downstream 602801 4125633 ~ 4126336 (+) True G199942
TU271034 lncRNA downstream 693132 4215964 ~ 4216402 (+) True G199950
TU271038 lncRNA downstream 722945 4245777 ~ 4251985 (+) True G199953
XM_039785176.1 mRNA upstream 116767 3369799 ~ 3384604 (+) True ak7b
XM_039785395.1 mRNA upstream 155787 3344816 ~ 3345584 (+) True LOC120548881
XM_039785814.1 mRNA upstream 226500 3259535 ~ 3274871 (+) True im:7136021
XM_039785812.1 mRNA upstream 257909 3238623 ~ 3243462 (+) True yipf6
XM_039785393.1 mRNA upstream 986730 2513511 ~ 2514641 (+) True LOC120548878
XM_039787073.1 mRNA downstream 875818 4398650 ~ 4421094 (+) True dio2
XM_039786714.1 mRNA downstream 904980 4427812 ~ 4484962 (+) True LOC120549660
XM_039785561.1 mRNA downstream 1499826 5022658 ~ 5024934 (+) False LOC120549013
XM_039785562.1 mRNA downstream 1500590 5023422 ~ 5024934 (+) False LOC120549013
XM_039785558.1 mRNA downstream 1500593 5023425 ~ 5024934 (+) True LOC120549013
TU270700 other upstream 807918 2692473 ~ 2693453 (+) True G199689
TU270658 other upstream 952832 2547985 ~ 2548539 (+) True G199652
TU270561 other upstream 1341988 2158890 ~ 2159383 (+) True G199564
XR_005637481.1 other upstream 1617559 1883694 ~ 1883812 (+) True LOC120549988
XR_005637688.1 other upstream 1617781 1883472 ~ 1883590 (+) True LOC120550216
TU271252 other downstream 1519127 5041959 ~ 5053742 (+) True G200129
XR_005637303.1 other downstream 1577636 5100468 ~ 5187407 (+) False apoba
TU271419 other downstream 2186853 5709685 ~ 5715117 (+) False LOC120549411
XR_005637381.1 other downstream 2192385 5715217 ~ 5718108 (+) False LOC120549412
TU271624 other downstream 3045444 6568276 ~ 6571757 (+) True G200452

Expression Profile