RNA id: TCONS_00072993


Basic Information

Item Value
RNA id TCONS_00072993
length 719
lncRNA type retained_intron
GC content 0.47
exon number 4
gene id XLOC_037082
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 21306902 ~ 21357841 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttgttgagATTGTCAAACGTTGAATAAAAATTCACACtttaaagcacttcatgggatcTTTAACATGCTTTTATTTAGCTGCTCTTGTcagttgttagtttttatttatttatttattttttataaatgtgtgctACTGTTCCTAATCTCTGTTCTCCTATGTTCAGTTTCCCTCTCTGTGTAACCAGTATTATAAGCTCATCACCTTCATCTGTGAGATTTTCCCAGAGAAGATCCCTCAGCTGCCCGAGGAGCTCTTCAAGAGCCTCATGTGCTCCCTGGAGCTGGGAATGACCTCgatGAGCTCAGAGATCAGTCAGCTGTGTCTGGAGGCTTTGTCCCCATTGGCTGAACAGTGTGCCAAGACACAGGAAAAGGACACACCCCTATTTATTGCCACGAGGCATTTTCTTAAATTGGTGTTTGACATGCTCGTGCTGCAgaagcacaacactgagatgactGTAGCAGCTGGAGAAGCACTGTATACACTAGTGTGCCTTCATCAGgCGGAGTACTCGGAGCTGGTGGAGACGCTGCTGTCCAATCAGAGGGATGCTCTGATCTACCAGCGGCTGGCGGACGCGTTCAACAACCTCACTGCCAGCAGCACACCGCCAACAATGGACCGCAAGCAGAAGGTGGCCTTCCTCAAGAGCCTGGAGGAGTTCGTCGCCAACGTTGGAGGGCTCCTGTGTGTCAAATAAAGCAGTTCCTCC

Function

GO:

id name namespace
GO:0006611 protein export from nucleus biological_process
GO:0015031 protein transport biological_process
GO:0005634 nucleus cellular_component
GO:0005643 nuclear pore cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005049 nuclear export signal receptor activity molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport

ZFIN:

id description
ZDB-GENE-030131-3062 Predicted to enable nuclear export signal receptor activity. Predicted to be involved in protein export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in nucleus. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm. Is expressed in several structures, including adaxial cell; alar plate midbrain region; eye; midbrain; and musculature system. Orthologous to human XPO4 (exportin 4).

Ensembl:

ensembl_id ENSDART00000144188

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075091 lncRNA upstream 147596 21202272 ~ 21205472 (+) False XLOC_037077
TCONS_00075092 lncRNA upstream 147596 21202948 ~ 21205472 (+) False XLOC_037077
TCONS_00075090 lncRNA upstream 482011 20863668 ~ 20871057 (+) False XLOC_037073
TCONS_00072969 lncRNA upstream 482011 20867269 ~ 20871057 (+) False XLOC_037073
TCONS_00072968 lncRNA upstream 483874 20863668 ~ 20869194 (+) False XLOC_037073
TCONS_00073002 lncRNA downstream 139054 21495873 ~ 21496699 (+) True XLOC_037086
TCONS_00073006 lncRNA downstream 201140 21557959 ~ 21558801 (+) False XLOC_037087
TCONS_00075093 lncRNA downstream 213104 21569923 ~ 21712146 (+) False XLOC_037087
TCONS_00075094 lncRNA downstream 213722 21570541 ~ 21601633 (+) False XLOC_037087
TCONS_00075095 lncRNA downstream 213722 21570541 ~ 21755910 (+) False XLOC_037087
TCONS_00072987 mRNA upstream 53732 21277846 ~ 21299336 (+) False XLOC_037081
TCONS_00072989 mRNA upstream 53787 21277919 ~ 21299281 (+) False XLOC_037081
TCONS_00072988 mRNA upstream 53787 21277919 ~ 21299281 (+) False XLOC_037081
TCONS_00072990 mRNA upstream 53787 21281652 ~ 21299281 (+) True XLOC_037081
TCONS_00072986 mRNA upstream 78404 21268739 ~ 21274664 (+) True XLOC_037080
TCONS_00072994 mRNA downstream 2122 21358941 ~ 21363101 (+) False XLOC_037083
TCONS_00072995 mRNA downstream 2158 21358977 ~ 21363501 (+) True XLOC_037083
TCONS_00072996 mRNA downstream 26801 21383620 ~ 21397772 (+) False XLOC_037084
TCONS_00072997 mRNA downstream 26808 21383627 ~ 21399655 (+) False XLOC_037084
TCONS_00072998 mRNA downstream 26919 21383738 ~ 21401302 (+) False XLOC_037084
TCONS_00072979 other upstream 126936 21214940 ~ 21226132 (+) True XLOC_037078
TCONS_00072978 other upstream 148346 21204616 ~ 21204722 (+) True XLOC_037077
TCONS_00072967 other upstream 493575 20857720 ~ 20859493 (+) False XLOC_037073
TCONS_00072953 other upstream 916553 20433812 ~ 20436515 (+) True XLOC_037067
TCONS_00072952 other upstream 961034 20386745 ~ 20392034 (+) True XLOC_037066
TCONS_00073005 other downstream 184034 21540853 ~ 21559785 (+) False XLOC_037087
TCONS_00073007 other downstream 214614 21571433 ~ 21712146 (+) False XLOC_037087
TCONS_00073020 other downstream 627290 21984109 ~ 21985996 (+) True XLOC_037095
TCONS_00073021 other downstream 633239 21990058 ~ 21991212 (+) False XLOC_037096
TCONS_00073026 other downstream 636309 21993128 ~ 21993915 (+) False XLOC_037097

Expression Profile

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