RNA id: TCONS_00073004


Basic Information

Item Value
RNA id TCONS_00073004
length 6971
RNA type mRNA
GC content 0.43
exon number 22
gene id XLOC_037087
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 21535885 ~ 21755910 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAATCCGGCGGAACAAACGGTTACTTGGCTCATTACCCTTGGGGTTTTGGAATCACCAAAAAAGACCATTTCGGACCCCGATGGATTTCTGCAGGCTTCGCTGAAGGATGGGGTCGTCCTGTGCAGGTTGCTGGAGCGGCTGCGTCCAGGCACTACTGATAAAATTATCCAAGACCCCAAGAACGACAGCGAGTGCTTGAGCAACATCACGGAGTTTCTGAAGGGCTGCGCGGTGTTTCGCGTCGAGCCATTTGAGGCTGGTGACCTGCTTCAGGGCCACAACATTAGCAGAGTCCTCACTACACTGGTTGCCCTCAATAAAGTAACTGCAGATATTGGCATTGGCAGCGACTCTGTATGTACGCGTCACTCTTCCGCCCACCGGATCAAGTCCTTTGAATCGCTGGCCTCCCAGTCTTCACTGGGCCGATCTTCTAAATTGCTCCATAACCAGTTTCGCAGCCTTGACATGACGGATAACAGTAACGCTCAGTTAGTGGTTAAAGCTCGCTTCAACTTCCAGCAGACCAATGAGGATGAGCTTACTTTCAGCAAAGGCGACCTCATCAGTGTCACTCGCACAGAAGAAGGGGGTTGGTGGGAAGGAATCCTCAACGGCAAGACGGGCTGGTTTCCGAGCAATTATGTCAAAGAGGTCAAAGGGTCAGACAAACAGGTGTCCCCAAAATCTGGAAATCTTAAAAGCCCTCCCAAAGGTTTTGATACCGCATCCATCAGTAAAACCTACTACAACCTGgTGCTACAGAACATATTAGAAACTGAAACAGAGTATTCAAGGGAACTCCAAAACCTTTTGACCAGCTACCTGAGACCTCTACAGATGACAGAAAGACTGAGCCCTGCAGATGTTAGTGTCATTCTCGGGAACCTGGAGGAGATCAGCACTTTCCAGCAGACTCTGGTCCAGTCACTGGAGGATCTCACCAAGCTTCCAGAGCTGCAGCAGAAGGTGGGAGGCTTCTTTCTCAACCTCATGCCTCAGATGAGGTCTCTTAATGTGTCTTACTGCTCCAACCATCCATCGACAGTCAATGTTCTCACCGTTCACAGTGAAGAACTTGGGGAGTTCATGGAGGCCAGGGGTGCATCTGTACCTGGTATTCTCACACTGACCTCGGGCCTCAGCAAACCCTTTATGAGGCTGGACAGATATCCTACATTACTGAAGGAGCTGGAGAGACACATGGAGGAGGGTCATCCAGACAGGACAGAAATTCAGAAATGTATGACCGCCTTCAAGAATCTCTCTGCACAATGTCAGGAGGTGCGGAAACGCAAGGAGCTGGAGCTTCAGATCCTGGCAGAGACCATTCGCCTCTGGGAGGGCGAGGACATCAAGACATTGGGTTCAGTACTGTATATGAGTCAGGCCATGGTACAGAACCACGGCTGTGAGgAGAAGAATGAGCGTTACCTTTTGCTATTTCCTCATGTTTTGCTCATCCTGTCCGCCAGTCCAAGGATGAGTGGCTTCATCTACCAGGGCAAGCTACCTTTGAGTGGGATGACTGTGACCCCATTAGAAGACTGTGAGAGTCATAAAGATGCTTTTGAGCTCTCGGGAAGCATGTTTGAGAGGCTTCAGGTGATCTGCTATAACAAGCAGGATTTGCATGACTGGCTCGAGCATCTGAATCGACAGACCAAACACACCACCATGGCGGCACCCAGCATGAAACCCCTCACTGTCCCCTGCCACACACTCCCGTCTCACCCTCTGACGCCCTCCAGACATGGAGAAAGCCGGGGCCTAACTGTGGCTCCTGCTTACCACACCCTACCACACCCCTCCTCTCATGGGACCCCACATAGCACCATGATGTGGGGTCCACTGGAGCCCCCAAAAACCCAGAAGCCCTGGAGCCTGAGTTGCTTGCGTCCAGCGCCTCCACTCAGGCCCTCAGCTGCTCTCTGTTATAAAGAGgACCTCAGTAAAAGCCCTAAGACTATGAAGAAGCTGCTGCCCAAGAGAAAGCCTGAGAGGAAGCCGTCTGACGAGGAGTTTGCGCTAAGGAAGAGTACTGTAGCTCTAGAGGAGGACGCTCAAATCCTGAAAGTGATCGAGGCCTACTGCACGAGTGCCAAAACCAGACAAACTCTAAACTCAACATGGCAAGGCACTGATCTCATGCACAACCACGTTTTGGATCAGTCCAGCGCGGATTCTCTGGGCCGCCGTAGCAGTATCTCGAGGCCCGAGGCCACTTCTGACCTCTCAGAGGACTCTGATTATGACAGTATATGGACGGCCCACAGTTACAGGATGGGCTCTGTTACCCGACAGTGGAAAGATGGCAGTCCAGCATTGATAGTTCCTGGCGACGAGAAGTTCAGTGTAGACGAGTTGAAGAGTAACGGTCAGACTCTTCTGGAGGAGAAgAGTCTTGTTGATGTTGTTTATGCTCTGAGAGATGAAGTACAAGAACTTAAACAGgactataaaaaaatgaaaaaatcccTGGAGGAAGAACAGAGAGCTCGGAAAGATTTGGAGAGGATcgttaaaaaaatgctaaagaaTATGAATGATCCTTCTTGGGATGAGACAAATTTATGATATTAGCTGCCCTCTTACTACAGGTTTCTTATTTTAAACTGGATAAATGACCTGGAAGCCCTTATAGGTCATATAAATTTACCTTTATCATGTACATGGGTTAATATGAGTCTGCAGTAGCATAAAAATGTTACGTGTTGAATCTAATACGGCTCTAAAAATTGAAAAACACTAATTTTATTGCTTAACAATCATGATCGCATCAGGCGGCATGAATGTTATCTGTTGAATTTGTCTTCCACCTGATGATAGGTGCTGAGAAGGACAGTTCCTTAGTCAGTTTGGGATCGAGAGTGTCCTGTTTTTCTACAAAATTACCTTTATCACTACAAGAGTTCAAGAGATCATCAGATTTTACAGGTACTTGTGGtttttaaatggcttttatttaGATGCACACTGATTTAAAATTTTTACTCTGTGAATACTTTCATGATGTGAACTTTCTCCATTCCATTTAATTGTTTACATGCAGATgttgatatttaattattatttcaacaGTGTGTGCAAACAGCAAAGCAAGAGCCGCACTATTTTTTTGAATGTGGAACATGAAGCTTATATGTGTGTCAGTGCATATTTTAGGTGCCATTGTGACTCAAGCTGTGACGGGAATTCTATATATCCATCATACCTGTGAAAAAAGCTTTTATCCCCTCCCCGATGATTCCAGTTATGACTGTACATTGCAGTGTCATTTATATTTTGCGTGACCAAAGCATAAGCCAACCTCTTATTTATGAACTTCACTATCTGTGACTTTATACTGTACTTGACATTTATTCCTTATAGCTCTTACAAAATAACCTCATCTGAATTCATGTAGGATATTTATTTAGTGTTCTTTATCTCAGATCCATGTTACTGTAAATTAATTCTGTAAATAAAGACAGTTTATTTGCTTCTTCGGTTGCATCTGTTCAGTTTAAATGGAACAAACAAACTTGATCATAAACAATATGTGGGTCAAAGACAAGCCTTTTTTTGACCCTTTTCATCAACATAACATTACTTgagtcatttattaaaaattatattaaatagtatattgacttaaatagtttgtttttatggcatcaaatgattcttgttttaaatatgccTGACATGATTACTTGATATATAAACTATTGTtctgtggtggaaagagtaccattacttgcttaaACATGTAGTGCAAGCAGATTAAAAGCATTTGTTGTAAATATtccttaaagtatgagtaaaaagtagccctttcaaaagtactcaagagttgtGAGTATTACTGATGCATGACTAAAAAGCTGAGgcatttacatctaatttgtggatgtgtgtaaacgtaacattctgtagtgcatttagttattgcccagcaggcaaacaacatcataagacgtaaatattaggttagatttatatTGTGATGCCAGATGACctaaattcaatgtctagcccgCCTTTAagcacaacattattttgatgtctaataacgatcaaatgatgttgatatttatttgattttatctCGTGTTAGAAAGTAACAAAAATCCAGCGTTgagccaatatcttaaaccaacgtcatattgatgtcaaatactgacattcattcatcaggtatggcaaccagaATCCAACATCTGAAAGACATCATATTGGTATCGTCCACACAGCAtcaagctgtaatatcattagacattgatatttggatGATTTTAGGTTGAATGTTGACATCGGCCTGACAATGGGCTCTAATGTCAatactattttcatttataaacaaaatgctatgtccccatgacgttggggtacaacgtcaatctgatgtcatgttgatgtcttgtgcctgctgagtGTTTGAGGCCATTTGGGTCATAATACTGTAAACATCTgacattttctcatcagtgacctgcatctaaacagtttctgggtcaatgcgtgtaaagattttggacatcttcttggacacttttaatgcttccaaatggtttgctgcatataaatagtataaatagcCCATGTCTtgatgatgcgatttaccttctatgtgtgatctATGTGACCTATTAccgggaaatacccatacacacttgcacaatttagtttattcaattcacttatagcgcatgtctttcgactgtgtgggaaacccacatgaacacgaggagaacatgcaaactccacacagaaatgtcaactggcccaactgggactcaaaccagcgactatTTTGTTGCGTGgtgagagtgctaaccactgagccaccgtgctgccctttaTAAAGTGTTTTGTATTAGTATTTTACAAGTCTTAGTACCATTACAAATGTCTCaagttacttttattttcattgataGAACATTTTTGCAACTCTTAACCTGACATCATGTTTATCAGATGAATAATGAGATAACTCATCTCACACCTGTGTTAACTGTGtgtgaacaaacaaacatgttggGTGCGGTAGCTCAGGAGTTAAAGTTAGGTTTCTGTACTCCATCAAGGGGAAGGGCATAACGACAAGGGTGACTTTATGCCCTTTATGTCTTTCGTCAGCACACAACAGTTCTGGGTGAAGGTTGTGCATGCACCAGGCTCTATTACAGTGACAAGGCAATCTAGTCCCTTTGTGGGCGATGATTCTACTTCATTGATTTACAATGGAAAGGATATAATTTTGCTGGTGTTGGCAAAAAGCTCAAATGTCAGGCTTTTCAGAATGCCAGCATTGCCTTGTTCGCAGATGAATAAGGAGAAAGTCACCTTTTGTCTCCTGTTAAATATTCCTGCATAAATACAAAGGAGCATAATGCCCTCCTGATAAAAGGAAGCCCTGATTTATCCTGATTTATCCTTTAGTGTATAGATAAAACCCGCTGATAAATGCCAGGTTGGCCTTTTCATTTTTGTTCTCTGAGGTTCGCTTTGCTTTTTTGCAGCATATCGAGTTTGGAAGACGGGTGTCGTTTTCAGAGACGCTGTTTTGTGGAAAGGACACAAAAGATGCTTTAAACCTGCGTTAATGATATTCATGTTGCTTTGAAGTGCAAGTTTAGGAAACAGTGCAAAAAGTTTGACTTCCAGGTATTATCATGCAGTTACCTGTTGTTGAAATGCGAAAGGTATGACTTGGACTCAGTGGACATGGAATCAATTAGCTTTTGACCAGTCcatagacacacacgcacacgcatgcTTGTCTAAGACCCTGTCTCTCCCTTTCTTTCTCTCCTTTGGTCTATTCAGTAGCCTGTGATCATTTAGATTTGACATGCATTGTAGCTGAGCTGGTCTCTCTCTTttgctctctctccctctccctcttttGCTACTGTCTGTCATTAATTTCCAGGCTTTACAATTTgccaaaaaagaaagagaaaagagtGAGTGAGTGGTGGAAGGATAAGAGCTCAGTGTCCTTTTGAAGGGGTTTGTTATTGCACAAAAACAGCCGCCCAATAATTTTTCGTCAATGTTTAACTCTAAAAGCTTTTCCCCGTCAGCTTTTGAAAAGAAGAGCAATAAAGCCCTATTCATACGGACTGAATAAAAACAGTCCTCTGGGGGCTATGACCGAAGGGCTTCTTTTCTTCTGCCTCTAATCAAATAGGAACTGAAATGAATTAGAGTTTTCTTATGAAAATAGCCTTTGTTGTCAGGCAGGCCGGTAATTCATAAACAATAAGCAACGTCATTGTGTGGCTAGTAATATATTCATGCTGTGGAAAGGCTAGAAGGCAGTGCAGGACTATGGCTTTGTGAATGAGGGGAGGGAAGGATTGGTCCTGGACTCTTCATTTGCAGTCTTCACAGTGGGTGGTTCTGGTAACCACCAGTTTCTcttcgtctctctctctctatttctctcatGCTCCTGATGTGGTCTTCTCATTTTCCTCATGCTCTTCCTTGTTTGCTTATTTCTTGCAACTTTTCTCATTTTGACCTTTCTCAAAGGCCTCTCGCTCTTCCTGTGCCTTGACCTGTCAAGTTTTTCAACTGCTTTTTTGCTCCTTTTTCCTCTGAGCAAAGGTTTATATTCTGGAAAACTTCTGGCTGGTGTTGTGGATTCTGCTCCCAAACTCGTCTCTCTTGGAAAAAGTAGTGGATTATCTGAACCATGAGGAATGTGTCGCGGAGGGCAAAGGGCAAATGGACTACAGCAACTTGGATTTGTACTTGAACTTGGATTACCACAAACCTGAGGAAAAACTGTGTTCTCGCTTATAAGGGATTAATGCAGCTCTTTTGGTGGACCTGGATGTCTTTTCTGTCAGTTTTTCAACATGAAACGGCAAAATTGGTTGCTTAAATTCCATTATTTTCTTTTCTCCTCTGCTTTGACATTATTCATGGAGTTAAATATATTGACAGGTTTTGACGAGGCTGTTTCCGTc

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060322-11 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in lamellipodium. Orthologous to human ARHGEF7 (Rho guanine nucleotide exchange factor 7).

Ensembl:

ensembl_id ENSDART00000182266

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073002 lncRNA upstream 39423 21495873 ~ 21496699 (+) True XLOC_037086
TCONS_00072993 lncRNA upstream 179303 21353068 ~ 21356819 (+) True XLOC_037082
TCONS_00075091 lncRNA upstream 330650 21202272 ~ 21205472 (+) False XLOC_037077
TCONS_00075092 lncRNA upstream 330650 21202948 ~ 21205472 (+) False XLOC_037077
TCONS_00072969 lncRNA upstream 665065 20867269 ~ 20871057 (+) False XLOC_037073
TCONS_00075096 lncRNA downstream 783 21571349 ~ 21712146 (+) False XLOC_037087
TCONS_00075097 lncRNA downstream 143771 21714337 ~ 21732241 (+) False XLOC_037087
TCONS_00075098 lncRNA downstream 148946 21719512 ~ 21732241 (+) False XLOC_037087
TCONS_00075099 lncRNA downstream 149208 21719774 ~ 21755910 (+) True XLOC_037087
TCONS_00074895 lncRNA downstream 191130 21761696 ~ 21762969 (+) False XLOC_037089
TCONS_00073001 mRNA upstream 126656 21407987 ~ 21409466 (+) True XLOC_037085
TCONS_00072999 mRNA upstream 131056 21401189 ~ 21405066 (+) False XLOC_037084
TCONS_00073000 mRNA upstream 132366 21402863 ~ 21403756 (+) True XLOC_037084
TCONS_00072998 mRNA upstream 134820 21383738 ~ 21401302 (+) False XLOC_037084
TCONS_00072997 mRNA upstream 136467 21383627 ~ 21399655 (+) False XLOC_037084
TCONS_00073008 mRNA downstream 152167 21722733 ~ 21724661 (+) True XLOC_037088
TCONS_00073009 mRNA downstream 222999 21793565 ~ 21816606 (+) False XLOC_037090
TCONS_00073010 mRNA downstream 225351 21795917 ~ 21816234 (+) False XLOC_037090
TCONS_00073012 mRNA downstream 248516 21819082 ~ 21824647 (+) False XLOC_037091
TCONS_00073013 mRNA downstream 248570 21819136 ~ 21824647 (+) False XLOC_037091
TCONS_00072979 other upstream 309990 21214940 ~ 21226132 (+) True XLOC_037078
TCONS_00072978 other upstream 331400 21204616 ~ 21204722 (+) True XLOC_037077
TCONS_00072967 other upstream 676629 20857720 ~ 20859493 (+) False XLOC_037073
TCONS_00072953 other upstream 1099607 20433812 ~ 20436515 (+) True XLOC_037067
TCONS_00072952 other upstream 1144088 20386745 ~ 20392034 (+) True XLOC_037066
TCONS_00073007 other downstream 867 21571433 ~ 21712146 (+) False XLOC_037087
TCONS_00073020 other downstream 413543 21984109 ~ 21985996 (+) True XLOC_037095
TCONS_00073021 other downstream 419492 21990058 ~ 21991212 (+) False XLOC_037096
TCONS_00073026 other downstream 422562 21993128 ~ 21993915 (+) False XLOC_037097
TCONS_00073045 other downstream 821000 22391566 ~ 22447578 (+) False XLOC_037107

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_09644689_09665350.mRNA True 4595 mRNA 0.45 23 CI01000009 9643316 ~ 9665830 (-)
bowfin (Amia calva) AMCG00014369 True 3625 mRNA 0.46 20 CM030128.1 11177961 ~ 11220774 (+)