RNA id: TCONS_00073011


Basic Information

Item Value
RNA id TCONS_00073011
length 810
lncRNA type retained_intron
GC content 0.34
exon number 2
gene id XLOC_037090
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 21793565 ~ 21816606 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtcatgatgacagtaaataatattttacttgatatttttcaagacacttctttacagcttaaagtgacatttaaaggcttaactaggttaataaggtgaactaggtaggttagggtaattaggcaagttattgtataacgatggtttgttctgtagactatcaaaaaaaaatagcttaaaggggctaataattttgtcccaaaattgttttttaaaaaattaaaaactgcttttattctagccgaaataaaacaaataagactttctccaaaagaaaaaaatattatcagacatactgtgaaagttttcgtgctctgttaaacatcatttgggaaatattaaaaaaagaaaaaaaatcaaaagggggctaataattctgacttcaactgtatataattaggTTTCATTAAATaaccatatttattttataaattgatAATACAAAACAGCTGTGTTCAGAATTGTTATTcatatgatattttaaaaaagaaactccAAAATGAACTGTGCAGCTGAAAGAGTCAGAAGGATGAGCACTGGGCCACTGCTCTTGCATTTTGAgtgtatttgttttgtatttgtgtgtgtgtagatccCAGTGCGGCTGAGTTACGCAGGCTTATGATGTTGCATGGTGGGCAATTTCATCTGTATTACTCTCGCTCCAAAACCACGCACATCATTGCCACCAACCTGCCCAACTTCAAAATACAAGAGCTCAAAGGAGAGAAAGTAGTGCGGCCAGAGTGGATCATAGACAGTATAAAAGCAGGTCGCCAACTATCATATATTCAGTATCAGCTCTATGCG

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0071897 DNA biosynthetic process biological_process
GO:0042276 error-prone translesion synthesis biological_process
GO:0070987 error-free translesion synthesis biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003684 damaged DNA binding molecular_function
GO:0017125 deoxycytidyl transferase activity molecular_function

KEGG:

id description
ko03460 Fanconi anemia pathway
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-081105-180 Predicted to enable DNA-directed DNA polymerase activity and deoxycytidyl transferase activity. Predicted to be involved in error-free translesion synthesis and error-prone translesion synthesis. Predicted to act upstream of or within DNA biosynthetic process and DNA repair. Predicted to be located in nucleus. Orthologous to human REV1 (REV1 DNA directed polymerase).

Ensembl:

ensembl_id ENSDART00000146435

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075100 lncRNA upstream 36340 21762019 ~ 21765735 (+) True XLOC_037089
TCONS_00074895 lncRNA upstream 39106 21761696 ~ 21762969 (+) False XLOC_037089
TCONS_00075095 lncRNA upstream 46165 21570541 ~ 21755910 (+) False XLOC_037087
TCONS_00073017 lncRNA downstream 23774 21826734 ~ 21829744 (+) True XLOC_037092
TCONS_00073027 lncRNA downstream 190228 21993188 ~ 21993891 (+) True XLOC_037097
TCONS_00075101 lncRNA downstream 509773 22312733 ~ 22313617 (+) False XLOC_037104
TCONS_00075102 lncRNA downstream 509935 22312895 ~ 22313617 (+) False XLOC_037104
TCONS_00075103 lncRNA downstream 509969 22312929 ~ 22313617 (+) True XLOC_037104
TCONS_00073008 mRNA upstream 77414 21722733 ~ 21724661 (+) True XLOC_037088
TCONS_00073004 mRNA upstream 231509 21536122 ~ 21570566 (+) False XLOC_037087
TCONS_00073003 mRNA upstream 235402 21535885 ~ 21566673 (+) False XLOC_037087
TCONS_00073001 mRNA upstream 392609 21407987 ~ 21409466 (+) True XLOC_037085
TCONS_00073000 mRNA upstream 398319 21402863 ~ 21403756 (+) True XLOC_037084
TCONS_00073012 mRNA downstream 16122 21819082 ~ 21824647 (+) False XLOC_037091
TCONS_00073013 mRNA downstream 16176 21819136 ~ 21824647 (+) False XLOC_037091
TCONS_00073014 mRNA downstream 16782 21819742 ~ 21824190 (+) False XLOC_037091
TCONS_00073015 mRNA downstream 17141 21820101 ~ 21821156 (+) True XLOC_037091
TCONS_00073016 mRNA downstream 23764 21826724 ~ 21831588 (+) False XLOC_037092
TCONS_00073007 other upstream 89929 21571433 ~ 21712146 (+) False XLOC_037087
TCONS_00073005 other upstream 242290 21540853 ~ 21559785 (+) False XLOC_037087
TCONS_00072979 other upstream 575943 21214940 ~ 21226132 (+) True XLOC_037078
TCONS_00072978 other upstream 597353 21204616 ~ 21204722 (+) True XLOC_037077
TCONS_00072967 other upstream 942582 20857720 ~ 20859493 (+) False XLOC_037073
TCONS_00073020 other downstream 181149 21984109 ~ 21985996 (+) True XLOC_037095
TCONS_00073021 other downstream 187098 21990058 ~ 21991212 (+) False XLOC_037096
TCONS_00073026 other downstream 190168 21993128 ~ 21993915 (+) False XLOC_037097
TCONS_00073045 other downstream 588606 22391566 ~ 22447578 (+) False XLOC_037107
TCONS_00073048 other downstream 773985 22576945 ~ 22577059 (+) True XLOC_037108

Expression Profile

//