Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073051 |
| length | 745 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 7 |
| gene id | XLOC_037109 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 22631672 ~ 22649297 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0035778 | pronephric nephron tubule epithelial cell differentiation | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0035108 | limb morphogenesis | biological_process |
| GO:0060217 | hemangioblast cell differentiation | biological_process |
| GO:0008285 | negative regulation of cell population proliferation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-9572 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within several processes, including hemangioblast cell differentiation; limb morphogenesis; and pronephric nephron tubule epithelial cell differentiation. Predicted to be active in nucleus. Is expressed in several structures, including mesoderm; nervous system; neural tube; pronephros; and tail bud. Orthologous to human ETV5 (ETS variant transcription factor 5). |
| ensembl_id | ENSDART00000145005 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00073038 | lncRNA | upstream | 271111 | 22359962 ~ 22360742 (+) | True | XLOC_037106 |
| TCONS_00075101 | lncRNA | upstream | 318236 | 22312733 ~ 22313617 (+) | False | XLOC_037104 |
| TCONS_00075102 | lncRNA | upstream | 318236 | 22312895 ~ 22313617 (+) | False | XLOC_037104 |
| TCONS_00075103 | lncRNA | upstream | 318236 | 22312929 ~ 22313617 (+) | True | XLOC_037104 |
| TCONS_00073027 | lncRNA | upstream | 637962 | 21993188 ~ 21993891 (+) | True | XLOC_037097 |
| TCONS_00074896 | lncRNA | downstream | 5297 | 22642386 ~ 22642685 (+) | True | XLOC_037110 |
| TCONS_00073062 | lncRNA | downstream | 58544 | 22695633 ~ 22697854 (+) | True | XLOC_037112 |
| TCONS_00075104 | lncRNA | downstream | 351852 | 22988941 ~ 22998060 (+) | True | XLOC_037116 |
| TCONS_00073069 | lncRNA | downstream | 366787 | 23003876 ~ 23004450 (+) | False | XLOC_037117 |
| TCONS_00075105 | lncRNA | downstream | 366787 | 23003876 ~ 23006978 (+) | False | XLOC_037117 |
| TCONS_00073042 | mRNA | upstream | 13295 | 22375779 ~ 22618558 (+) | False | XLOC_037107 |
| TCONS_00073054 | mRNA | downstream | 19887 | 22656976 ~ 22662734 (+) | False | XLOC_037111 |
| TCONS_00073055 | mRNA | downstream | 19937 | 22657026 ~ 22658842 (+) | False | XLOC_037111 |
| TCONS_00073056 | mRNA | downstream | 20132 | 22657221 ~ 22672826 (+) | False | XLOC_037111 |
| TCONS_00073058 | mRNA | downstream | 40414 | 22677503 ~ 22679833 (+) | False | XLOC_037112 |
| TCONS_00073059 | mRNA | downstream | 40414 | 22677503 ~ 22748014 (+) | False | XLOC_037112 |
| TCONS_00073048 | other | upstream | 54794 | 22576945 ~ 22577059 (+) | True | XLOC_037108 |
| TCONS_00073045 | other | upstream | 184275 | 22391566 ~ 22447578 (+) | False | XLOC_037107 |
| TCONS_00073026 | other | upstream | 637938 | 21993128 ~ 21993915 (+) | False | XLOC_037097 |
| TCONS_00073021 | other | upstream | 640641 | 21990058 ~ 21991212 (+) | False | XLOC_037096 |
| TCONS_00073020 | other | upstream | 645857 | 21984109 ~ 21985996 (+) | True | XLOC_037095 |
| TCONS_00073057 | other | downstream | 21140 | 22658229 ~ 22662728 (+) | True | XLOC_037111 |
| TCONS_00073071 | other | downstream | 369362 | 23006451 ~ 23006978 (+) | True | XLOC_037117 |
| TCONS_00073073 | other | downstream | 409178 | 23046267 ~ 23046385 (+) | True | XLOC_037119 |
| TCONS_00073080 | other | downstream | 727153 | 23364242 ~ 23367209 (+) | False | XLOC_037128 |
| TCONS_00073088 | other | downstream | 910556 | 23547645 ~ 23555977 (+) | True | XLOC_037129 |
