RNA id: TCONS_00073042


Basic Information

Item Value
RNA id TCONS_00073042
length 3270
RNA type mRNA
GC content 0.52
exon number 27
gene id XLOC_037107
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 22375331 ~ 22618558 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAACAAATAACTGTTTTGTAAAACCACAATATTGTGAAGGttgataaaaatataaagctGATAATGCTTTCCCCCGTTTGAACGAACGAGCGATGGAGCTGCATCTTAAACGTCCATTGACTGATACGATGCCTCTGATGCTGCACGTGCACATGATGACTCTAGGTAGGCAGGTCGCTTTAGGTTTTGAGAAACAGCCTGAGTCACGACTCCAGATCGGCGGGGAGATTTGGACACAATGAATCGATCCGTGGtggcaaGACATCAAAAAGCAGTATGGTTTTCCTCTCTCTTGTTCAACTTTAGAAAGTGAACAGTGATATATCGGCGCACACCACAGGAAAGCACCGCCTCCGCTGCTCCACCACAGGCACAAGATCACGCTGGTTGACAGGTCATCATTTGCTCCAACCGGTGGCACGACGCACCTCTCCTTCACACCGTCCTGCTCCTCACGTCGCTCCGTCCTTTCACAACTTCACGTCGGGGAAGCCAATTCGCCATCTGCTCACAATAGAAGGAGATGTGACCATGCCAGATCATAGTGTCTCCTTCTCATCCCTGACCTGAGGACGATCGGCCTGTTTTCTCCTGCCCTGATCGGCGAGATGGGAGACTGGGTGTGTTTGAGCCCAGCTGAATTCTCCCAACTACAGCAGTACAGTGAGTATTCCTCCAAGAAGCTTAAAGATGTCCTGGAAGAATTTCACGGAAATGGTGTCCTCTCCAAGTACAACCCTGAGCAGCCCATCGATTATGAGGGCTTTCAGCTCTTCATGACCACCTACCTGGAGAATGACATCCCCGAGGAACTGTGCAAACACCTCTTCACCTCCTTCAAGAGCAAGAATGGTGGAGAAGGCTCCCCTGACACCTCTCGAGCTGGAGCAGGAATTCTGGAGCCCAAGTCCATTGATGCAGGCATCTCTATACAGACAGAAGTGGCCTGTGCACCCATAACAGgtatGAATGGGAAGAGTATTCTAAGCGCGATGAGCCGTCATACAGCTGAGAGCTCAGCGGGCATCACTCCAGGCTCAGGGGCCACCACATCACCGTGTTCATCCCGCTCCTCCTCACAGCGCTCAGGCACAGGGGGCCACACACCCAGAGGCCCCCACCGCTCACCCGGCACACAGCCTAAACCCCCAACGGGCAGCAGTAGTAGCAGCAATGCTCTGGCTCTCTCCAAGACCTCCAACTCCCCGCGCCTCTCCCCAGAGCGTAATCAATCTGAGAATCGTACATCCCTCCGGAGGAGTCCGTCTCCACAAAAAGGCTCTCCATCGCCCCAAGTGGTCTTCCTTAAAGACATTGTATGCTACTTGTCCCTGCTAGAGCGAGGGACGCCAGAGGACAAGCTTGAGTTCATGTTCAGGCTGTACGACACAGATGGCAACGGTCTGCTGGACAGTTCGGAGCTGGACCGCATAATAAACCAGATGGTCCATGTAGCAGAATACCTGGAATGGGACTCTACAGAACTGCGCCCAATTCTAAAGGAGATGATGGAGGAGATTGACTATGACCGAGATGGGACGGTAACACTAGAAGAGTGGATTCGAGGAGGAATGACCACCATACCACTCCTGGTACTGCTGGGAATGGAGACGAATGTACAGGAAGATGGGCAGCATATATGGAAACTGAAGCATTTCAACAAGCCAGCCTACTGTAATTACTGCCACACCATGTTGTTAGGAGTACGAAAGCAGGGTCTTTGCTGCGCACTATGCAAGTACACAGTCCACGAGCGCTGTGTGTCCAAAGACATTGCTCCTTGCATTAGCACCTACGCCAAGTCCCGCAGACACACCAATGCTATGCAGCATGTTTGGATGGAGGGCAACTCCTCAGCAAAATGTGACAAATGTCACCGCAGTATCAAGTGCTATCAAGGTCTGACAGGCCTTCACTGTGTTTGGTGTCAAATCACTCTCCATAATAAGTGTGCATCCAATATGAAGCCTGAGTGTGATGGTGGTCCATTAAGAGATCACACACTCCTGCCGTCGTACATCTGCCCTGTTGTGTTGGACCGTCATTCTGCTGTCAAAAGAGGTGAAGGTGAATCATCGCCAAGTACCAGTCCTGAGGACACCGGCCAGTGTTTCAAGTTCACCGGTGATGGACAGGCGCTGCAAATCACCCCTCTGCCCGGAACCCATCCCCTACTTGTGCTGGTTAATCCTAAAAGTGGTGGTCGGCAGGGTGAGAGGGTGCTGCGGAAATTCCAGTACCTTCTTAACCCTAGACAGGTGTACAGTCTGGAGCGAGGAGGACCTATGGCTGGGCTCAACTTTTTTCGAGATGTGCCTGATTTCCGTGTGCTGGCCTGTGGAGGCGATGGATCAGTGGGGTGGATTTTGGACTGTATTGATAAGGCCAGTTTTGCTCGTCATCCACCGGTTGCGATCCTGCCACTGGGGACGGGGAATGATCTGGCCCGCTGTCTGCGCTGGGGTGGAGGTTATGAAGGAGGAAGTCTGGTCAAGTTCCTCAGGGATATCGAGCACAGCACTGAGGTTCTTCTTGACCGCTGGAACATTGACATTGTCCCTGATGATAAGGAAGAGAAGGGTGACCCTGTGCCCTACAGCATAGTCAACAACTATTTCTCCATCGGAGTGGATGCATCCATAGCCCATCGCTTCCATCTGATGAGAGAAAAACATCCTGAGAAGTTCAACAGCAGGATGAAAAACAAGTTGTGGTACTTTGAGTTCGGCACCACAGAGACCATTTCAGCCACTTGTAAAAAGCTGAACGAAACTATTGAAGTGGAGTGTGATGGCATCATCTTGGACCTCAGCAGCACATCTCTGGAGGGCATCGCTGTGCTCAACATTCCCAGCATGCACGGGGGCTCTAACCTGTGGGGCGAGACCAAGAAAAGGCGCAATTACAATCGCATGAGTAAGAAGGTGCCAGAGAGAATGACTGGCAGCACTGTCACCGATGCCAAGGAGCTCAAGTTTTGTGTGCAAGATCTAAGCGATCAGCTTCTGGAGGTGGTGGGTTTGGAAGGAGCCATCGAAATGGGTCAGATCTATACAGGACTGAAGAGTGCTGGACGGCGCCTTGCACAGTGTTCCAATGTCACCATCAGGACGTCCCGACTGCTGCCCATGCAGATTGATGGAGAGCCGTGGATGCAGCCGCCATGCACGATACGGATCACGCATAAGAACCAGGTGCCAATGCTGTTGGGTCCGCCACAGAAAACGCCGTTCTTCTTCTTTAAGAAGCGCAACAGAAGTCGGGACTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000183956

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073038 lncRNA upstream 15037 22359962 ~ 22360742 (+) True XLOC_037106
TCONS_00075101 lncRNA upstream 62162 22312733 ~ 22313617 (+) False XLOC_037104
TCONS_00075102 lncRNA upstream 62162 22312895 ~ 22313617 (+) False XLOC_037104
TCONS_00075103 lncRNA upstream 62162 22312929 ~ 22313617 (+) True XLOC_037104
TCONS_00073027 lncRNA upstream 381888 21993188 ~ 21993891 (+) True XLOC_037097
TCONS_00074896 lncRNA downstream 23828 22642386 ~ 22642685 (+) True XLOC_037110
TCONS_00073062 lncRNA downstream 77075 22695633 ~ 22697854 (+) True XLOC_037112
TCONS_00075104 lncRNA downstream 370383 22988941 ~ 22998060 (+) True XLOC_037116
TCONS_00073069 lncRNA downstream 385318 23003876 ~ 23004450 (+) False XLOC_037117
TCONS_00075105 lncRNA downstream 385318 23003876 ~ 23006978 (+) False XLOC_037117
TCONS_00073039 mRNA upstream 9484 22364997 ~ 22366295 (+) False XLOC_037105
TCONS_00073040 mRNA upstream 9537 22365055 ~ 22366242 (+) True XLOC_037105
TCONS_00073036 mRNA upstream 9600 22351443 ~ 22366179 (+) False XLOC_037105
TCONS_00073037 mRNA upstream 15037 22359919 ~ 22360742 (+) False XLOC_037106
TCONS_00073035 mRNA upstream 294790 22080238 ~ 22080989 (+) True XLOC_037103
TCONS_00073049 mRNA downstream 13114 22631672 ~ 22649297 (+) False XLOC_037109
TCONS_00073050 mRNA downstream 13229 22631787 ~ 22649021 (+) False XLOC_037109
TCONS_00073051 mRNA downstream 13295 22631853 ~ 22637089 (+) False XLOC_037109
TCONS_00073052 mRNA downstream 13568 22632126 ~ 22636747 (+) False XLOC_037109
TCONS_00073053 mRNA downstream 15515 22634073 ~ 22647466 (+) True XLOC_037109
TCONS_00073026 other upstream 381864 21993128 ~ 21993915 (+) False XLOC_037097
TCONS_00073021 other upstream 384567 21990058 ~ 21991212 (+) False XLOC_037096
TCONS_00073020 other upstream 389783 21984109 ~ 21985996 (+) True XLOC_037095
TCONS_00073007 other upstream 663633 21571433 ~ 21712146 (+) False XLOC_037087
TCONS_00073005 other upstream 815994 21540853 ~ 21559785 (+) False XLOC_037087
TCONS_00073057 other downstream 39671 22658229 ~ 22662728 (+) True XLOC_037111
TCONS_00073071 other downstream 387893 23006451 ~ 23006978 (+) True XLOC_037117
TCONS_00073073 other downstream 427709 23046267 ~ 23046385 (+) True XLOC_037119
TCONS_00073080 other downstream 745684 23364242 ~ 23367209 (+) False XLOC_037128
TCONS_00073088 other downstream 929087 23547645 ~ 23555977 (+) True XLOC_037129

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_09125671_09199937.mRNA True 2445 mRNA 0.53 22 CI01000009 9125671 ~ 9199937 (-)