RNA id: TCONS_00073301


Basic Information

Item Value
RNA id TCONS_00073301
length 6238
RNA type mRNA
GC content 0.49
exon number 40
gene id XLOC_037246
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32073606 ~ 32106034 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGCAGTGACATGGCTGCTGATGACAAGGCTTCCTCCTCGTCCTCTGTGATGGACTGGAGTTCGGAGCCGCCTCCTTCGCCCACCAGTCCCTCCCATCTGACACACTTCAAACCCCTGACCCCCGAGCAGGATGAGCCACCGCTGCGCTCCGCCTACAGCTCCTTCGTCAGCCTGTTCCGCTTCAACAAAGAGGAAGGACGGCCTCCTTCAGTGACGGAAAAAAGTCAATCGGCCTCATCATCACCACAGGGGCCGCGACGCAACTGGTCTAGTCCCTCTCATTCAATACATGGCTCTGAAACACACAGGAAACATCCAGAACTACTCAGAAGAACATCCGCTGCTTCAGAGGGTAGACGGAAATCAGAAGCTCCTCTGGGCAGCCACGATCCCAGAACAGCTGTCCAGCTTCGCACAGCTCTCAAGAGGCTCAAAGAGATCATGGAAGGGAAAAGTCAGGACAGTGATCTGAAACAGTACTGGATGCCAGATAGCCAGTGTAAGGAGTGCTATGACTGCAATGAGAAATTCACAACCTTCCGACGCCGTCACCATTGTCGACTATGTGGACAAATATTCTGCAGCCGATGCTGCAACCAGGAAATTCCTGGCAAGTTCATGGGCTACACGGGCGATTTAAGGGCTTGTACATACTGTCGTAAGATAGCATTAAGCTATGCTCACTCAACAGACTCAAGCTCCATTGGAGAAGATCTAAGTGCTTTGTCGGACTCGCCTTGCTCCGTCTGTGTTCTGGAGCCCACTGAACCACGCACACCTGTAGGAGGTCGCAAAGCCAGCCGCAATATCTTCCTGGAAGAGGACCTAGCCTGGCAAAGTCATCAGGAATCTCAGAACAGCGGTCTCAATTCCAGACTGACAGTGGTCCAAGAGGATATTGGAAAGTCACCTGCCAGGAAGAGGTCAGCTAGTGTGACCAATTTGTCTTTGGACCGTTCCGGCTCATCCATGGTTCCTGCCTATGAGAGTTCGGTTAGTCCACAGAACAGCCGAGCTCTACCCAAGACCGACCACAGCGAAGAAGAGCGAAAGATCCTTCTAGATTCTTTTCAACTTAAAGATATATGGAAGAAGATTTGCCACAACACTACTGGGATGGAGTTCCAGGACCATCGGTACTGGCTGCGCACTTACCCCAACTGCATTGTGGGTAAAGAGTTGGTCAACTGGCTTTTAAGAAATGGCACTATTTCCACTAGGGCTCAAGCCATAGCTATAGGACAGGCTTTGGTAGATGGCCGCTGGCTTGACTGTGTAACCCATCATGATCAGATCTTCCGTGATGAGTACGCCCTTTATCGCCCCCTTCAGAGCACAGAGTTCTCCGAAACTCCTTCTCCAGACAGTGACAGTGTTAATTCCCTGGAGGGACACTCTGAACCGTCATGGTTTAAAGACATCAAGTTTGATGACAGTGACACCGAGCAGCTAGCAGATGAAAATGACTATGTCACACCAAGCTCGTCCAGCCCCAGCAAAAGAACATCTGTCAGCAGTTTCCACTCTGCAGTAGACAGTGACTCGGCCGCCTCCATCAGTCTAAACATGGAGCAGGACAACGTCAATTTCCACATTAAGAAGCAGGCCAAGTACCCCCATGTGCCTCCCTACCCAGCTGAGCAAAAAATGGAAGTCTTGCTCTCCGAAGATGGAGGTCAGCATATATCCATCAGTGATGCATTCATCAAAGAGTCTTTGTTCAACCGGAGGGTTGAGGAGAAAGCTAAAGAGATGCTCTTCACTCCTCTCGGCTGGCATCACAGCTCTCTGGATCAGCTGCGGGAAGAGAATGGGGAAAAGAAAGCGATGGAGCGGTTGCTGTCAGCAAATCACAGCCACATGATGGCGCTGCTGCAGCAACTGCTGTACAGTGAATCACTGTCTCTGTCGTGGCGTGACATCATCGTACCTGTGGTGAGGCAGGTGGTGCAGACGGTGCGACCGGATGTGCGCAGCTGTGACGATGATATGGACATCCGTCAGTTTGTCCACATCAAGAAGATTCCAGGAGGAAAGAAGTTTGACTCTGCTGTAGTGAATGGTTTTGTTTGCACAAAGAATATCGCACACAAAAAGATGAACTCTTACATCAAAAACCCCAAGATCCTTCTTCTCAAATGCTCCATTGAGTATCTATATAGAGAGGAGACCAAGTTCACCTGCATTGACCCAATTGTTTTACAGGAGCGTGAGTTTCTTAAGAACTATGTTCAGAGGATTGTTGATGTCCGACCAAACTTAGTCCTGGTGGAGAAGACTGTATCGCGAATTGCTCAGGACATGCTACTAGAGCACGGCATTGCCATTGTGATTAATGTCAAACCTCAAGTACTGGACCGTGTGAGTCGAATGACTCAGGGAGATTTAGTCATTTCAATGGATCAGCTTCTTACAAAACCTCGTCTGGGTACCTGCCACAAGTTTTACTTGCACTCCTTCCAGCTACCAAATAGTGAAGTGAAAACCCTGATGTTTTTTGAGGGCTGTCCTCCTCAGCTGGGCTGCACTATTAAGCTCCGCGGAGCCTCAGAGTATGAGCTGGCACGGGTAAAAGAGATCATCATTTTTATGGTGTGTGTGGCATACCACTCGCAGCTAGAGATCTCTTTCCTCATGGATGAGTTCGCTATGCCTCCCAGTCTGGCTGAGAGTTCTTCTTTCCCATGTCTGCTGGAAAGCACCACTTTACGGGAAGAGGATGAAACTAGTGGGGAACGGGAAAGCCAAGACAATGATGAGTCTACACTGGGAGATGACAATCTCACACTTGTTCCAGGAGATGACTTTGAGACAGGATTTACAGGGACTATCAAAGCCCACAGTCGAGAGCCTTCCACCTCTGAATCTTCTCATAAAGATGGAGAAAGCcccagaataaataaaaatgcttcaATTACCTCCTTCTCTGGAGGGGAGGAAGAAAATATAAAGACCTCCACGCCACTTTCCTCCTTCTCTTCCACCTTTCCTCAGCCGGTGACACCACCTTTCCTGATATCAGACGTAAAAGAAATGTCACAGGAAGTGGTCAAGGGGTCAGGTGAAGGGGAGAAGAACAAATATCTGGAGTCGACTCTGGTCCATCAGGACAGCACAAGCTCTGAGACCTCCCTTCCCCCAACTCGGCTCTTTAGAGACCCCTTACAGGACGACACAGGCCTGTTTGTGACAGAGCATGTAGCTTCTTCAGATGACCGCCTCAAATCCATCTCTGCTTTATTCAAACAGGAGCTAAAAGACATCATCCTGTGCATTTCACCCTTTATTACCTTTCGAGAGCCTTTCTTGCTTACCCCAGCTGGACTGCGGTGTCCTAGCCGGGATTATTTCCCTGAACAGGTTTACCTTTCACCTCTGCTGAACAAGGATTCAAAAGAACTGGATGGACGCCGCAAGAGGCAGCTGCTGAAAGAGTCCAGCCCAGGTTCTGGTAGCCTGACCAATGGTTCCGTTTCACACCAGAGAGCCATTCAGATCTTGCCCTGTCACAAACTCACTAGTGCCCGAATAGCAGAACAGGTAGGCAGCAGTCAGCAGCTGGCACGCATGTTAGCGGACTACCGTGCCCAAGGAGGACGTATCCGGCAAAGAGAGGGAACACAATTTCGTGAAGCCCCTCCCCCAAAGGCGCCAATAAAGGCAGATAGTGAAGAAGATAAAGGTGCAGGAGTGATTGACATGACCTGGTCTACTAAGTTGGACTGTTTAAATCCAATCAACCATCAGAGGCTCTGTGTTCTGTTCAGTAGCTCTTCAGCACAGTCTAATAATGCCCCAAACCCCTGCGTCAGTCCCTGGATTGTTACAATGGAGTTTTATGGAAAGAATGACTTGACTCTTGGTGTGTTTCTGGAGAGATACTGTTTTAGACCATCTTACCAGTGCCCCAGCATGTACTGTGAGACCCCCATGGTTCACCACATCCGGCGCTTTGTGCACGGTAAAGGCTGCGTCCAGATTGTACTGAAAGAGCTGGACTCGCCTGTTCCTGGATATCAGCACACAATCCTCAACTACTCATGGTGTCGCATCTGCAAACAGGTGACTCCTGTGGTCCCTTTGTCTAATGACTCTTGGTCCATGTCCTTCGCCAAGTACCTTGAGCTTCGTTTCTATGGTCATCAGTACACCCGTCGGGCTAACGCTGAGCCTTGTGGCCACTCTATCCATAAAGATTATCACCAGTACTTCTCTTACAACCAGATGGTGGCATCCTTCAGCTACATTCCAGTGAGGCTGTTAGAGATCTGTCTGCCTCCCCCGAAGATCATCATCAGGAACCAAGGTCCATCGAAATCCAGCTTGCAGCAGGATCTCAAAGACTTCTCCCAGAAGGTGGCTCAGGTGTACCTGGCTATAGATGACCGTCTTACCTCCTTAAAAACGGACACATTCAGCAAGACCAGAGAGGAAAAAATGGAGGACATGTTTGCACAGAAAGATATGGAGGAATCAGAGCTTCGGGGCTGGATAGAGAAGTTACAAGTGCGTCTGCAGACGAGTGTGATTGACTCTTCACAACAACTACAGGCTGTTCTGGAGTCAGTGGTGGTCAAAAAACAGGgcttgtgtgaaaccctgcagtCCTGGAACAACAGACTTCAAGAACTGTTCCAGCAAGAGAAAGGCAGAAAACGTCTATCTGTTCCTCCTAGCCCAGGCAGACACAGACAACCTACAACAGATGAGAGCAAGACTAGTGCTTTGGAGTCTTCTCCTCGTAACCCTTCCCCAGTGGTCCCAAATGGAGACAAAGAGGACCGTCATCTCAATACATTTCCATCAAGTTCAGGGTCCTCGTCGTTACTACAGTTACCATCTCCAGCTGAACAACCTTCAGATGTCATTACAAGCGGACCATCTTTCCCTGATCAGGACTCTGTTAGCAATCCAGAGGacATGTTTGATGGACACTTGCTTGGTTCCAATGATAGTCAGGTAAAGGAAAAGTCCACCATGAAAACAATCCTGGCCAACCTGTTACCTGGAAACAGCTACAATCCCATCCCTTTTCCTTTTGACCCAGACAAGCACTATCTGATGTATGAGCATGAGAGAGTTCCTATAgccgtgtgtgagagagagcccAGCTCCATAATTGCCTTTGCACTCAGCTGCAAAGAGTATAAAACTGCCCTTGAAGAGCTCACAAAGACAACAGCAAAGACTGGAGGTGATGACACTTCTCAGACCATCAgTGCTGGAGAGAGCAGAGTGAAGAACAGTCCAGCCAAACCCAGTGACAACAGCATGTCACAGCTGAGCCGCAGCAGCGTCGACGCTGATCCACTCAAGGAGCCTGAAAGTGCAGACAAACAGAAGAAGCAGACAGGGAACCCACATATTGAGCTGCAGTTCTCCGATGCAAATGCTAAGTTCTACTGCCGGATCTACTATGCTGAAGAGTTCCATAAAATGCGGGAGGAGATCATGGAGAGCACAGAGGATGATTTTGTGCGATCTCTTTCCCACTGTGTCAACTGGCAGGCGCGTGGTGGGAAATCTGGTGCAGTTTTCTATGCCACTGAAGATGATCGGTTTATTCTGAAGCAGATGCCCAGATTAGAGGTCCAGTCCTTTTTAGACTTTGCACCCCACTACTTTACGTACATCACAGGAGCGGTTCACCTAAAGCGACCCACAGCACTTGCTAAGATTCTGGGAGTGTACCGCATCGGCTACAAGAACTCCCAGAACAACACTGAGAAGAAGCTTGACCTGCTTGTGATGGAAAACCTTTTCTATGGACGAAAGATGGCACAGGTGTTTGACCTGAAAGGATCGCTGAGAAACAGGAACGTGAAGACGGACCAGGGAAAGGAGAGCTGTGAGGTGGTGCTCCTAGATGAGAACCTGCTCAAACTGGTGCATGACAATCCCCTTTATATTCGCTCGCACTGCAAGGCCATCCTGCGTGCTGCCATCCACAGCGACGCGCTCTTCCTGTCCAGCCACCTCATCATTGATTACTCCCTGCTGGTGGGCCGAGACGATTCCACAGATGAGCTAGTTGTGGGGATCATAGATTATATCCGGACTTTCACTTGGGATAAAAAGCTGGAGATGGTGGTCAAATCTACTGGGATTCTTGGAGGTCAAGGTAAAATGCCCACAGTGGTGTCACCAGAGCTGTATCGAACACGTTTCTGTGAGGCCATGGATAAATACTTCCTTATGGTCCCTGATCACTGGAGTGGACTTGGGCTCAACTGCTGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016310 phosphorylation biological_process
GO:0046488 phosphatidylinositol metabolic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0016020 membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0016307 phosphatidylinositol phosphate kinase activity molecular_function
GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity molecular_function

KEGG:

id description
ko00562 Inositol phosphate metabolism
ko04070 Phosphatidylinositol signaling system
ko04145 Phagosome
ko04810 Regulation of actin cytoskeleton
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-9636 Predicted to enable 1-phosphatidylinositol-3-phosphate 5-kinase activity; ATP binding activity; and metal ion binding activity. Predicted to act upstream of or within intracellular signal transduction; phosphatidylinositol metabolic process; and phosphorylation. Located in membrane and perinuclear region of cytoplasm. Is expressed in several structures, including brain; digestive system; eye; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Fleck corneal dystrophy. Orthologous to human PIKFYVE (phosphoinositide kinase, FYVE-type zinc finger containing).

Ensembl:

ensembl_id ENSDART00000148767

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073295 lncRNA upstream 5525 32069957 ~ 32071133 (+) False XLOC_037245
TCONS_00075154 lncRNA upstream 162196 31913496 ~ 31914462 (+) True XLOC_037243
TCONS_00073286 lncRNA upstream 647924 31347037 ~ 31428734 (+) False XLOC_037238
TCONS_00073308 lncRNA downstream 85288 32189139 ~ 32192519 (+) True XLOC_037248
TCONS_00074917 lncRNA downstream 119844 32223695 ~ 32238109 (+) True XLOC_037249
TCONS_00075155 lncRNA downstream 241032 32344883 ~ 32349025 (+) True XLOC_037252
TCONS_00074918 lncRNA downstream 432895 32536746 ~ 32537384 (+) True XLOC_037254
TCONS_00073321 lncRNA downstream 545225 32649076 ~ 32651437 (+) False XLOC_037255
TCONS_00073296 mRNA upstream 5228 32069989 ~ 32071430 (+) True XLOC_037245
TCONS_00073293 mRNA upstream 243093 31795343 ~ 31833565 (+) True XLOC_037242
TCONS_00073292 mRNA upstream 265855 31752628 ~ 31810803 (+) False XLOC_037242
TCONS_00073290 mRNA upstream 489702 31556043 ~ 31586956 (+) False XLOC_037241
TCONS_00073289 mRNA upstream 527095 31534601 ~ 31549563 (+) True XLOC_037240
TCONS_00073305 mRNA downstream 74199 32178050 ~ 32187086 (+) False XLOC_037247
TCONS_00073306 mRNA downstream 74523 32178374 ~ 32188445 (+) False XLOC_037247
TCONS_00073309 mRNA downstream 197166 32301017 ~ 32304576 (+) False XLOC_037250
TCONS_00073310 mRNA downstream 197274 32301125 ~ 32305005 (+) False XLOC_037250
TCONS_00073311 mRNA downstream 197274 32301125 ~ 32305007 (+) False XLOC_037250
TCONS_00073294 other upstream 83225 31993311 ~ 31993433 (+) True XLOC_037244
TCONS_00073291 other upstream 503979 31566399 ~ 31572679 (+) True XLOC_037241
TCONS_00073288 other upstream 580893 31495648 ~ 31495765 (+) True XLOC_037239
TCONS_00073282 other upstream 910256 31076056 ~ 31166402 (+) False XLOC_037235
TCONS_00073279 other upstream 1061332 30820290 ~ 31015326 (+) False XLOC_037234
TCONS_00073307 other downstream 80204 32184055 ~ 32187252 (+) True XLOC_037247
TCONS_00073322 other downstream 545225 32649076 ~ 32652072 (+) False XLOC_037255
TCONS_00073333 other downstream 970829 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073341 other downstream 1076831 33180682 ~ 33181352 (+) True XLOC_037264
TCONS_00073351 other downstream 1140347 33244198 ~ 33245755 (+) True XLOC_037270

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00000785 True 7979 mRNA 0.59 40 CM030137.1 3181479 ~ 3205611 (-)