RNA id: TCONS_00073306


Basic Information

Item Value
RNA id TCONS_00073306
length 2317
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_037247
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32178050 ~ 32188445 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCGCAGTCTGGGCAACCCTATCCTGCATCCCGTGACAATTCTGCGCACGCAAACCCTCTGCACAATTAAAACACTTACGTCAGTGAGTGTCATCGATGACGGACGGACGACTCAACGAATCAGAGGCCGTGAAAAACAGCCTCGGCCAATGACATTGTAGGACGGGTCTTCGAGAGGGCTGGTCTTCGAGACGGGAAAAGAGTTCTCGACGGGAGGAGGCGAAAGAGAGGTGAAGTGAAGATGGCGAGAGGCTCCCGGTGTTTGAGGAGAGCGGTAGCGGAGTGTATCAGAAACTTACCGTCCACAGCCGGTCGAGAAACACCAGGGAAGAGTGGAGTGAGATATCTGTCTTCATGTGGGATCTTGATGACCAGGGCGCCGCCCCTCTTCAGGGCTGTATCAAGTCGTGCAGTGGTGGCTCCAGCCAGGAGCTTCTTCAACTTTGCAGAGTCATTCAACAAGAGGAAGGAGTACTCTGAAAGACGCATTATTGGGTACTCAATGCAGGAAATGTATGAGGTTGTGGCCAAAGTTGAAGACTACCTGCTATTCGTGCCCTGGTGTAAGAAATCAGATGTTATTTTCCGCCGCTCAGGCTTTTGCAAAGCTAAACTGACTGTAGGCTTCCCTCCTGTGGTAGAAAACTACACCTCTCTCGTTTCTACAGTTCGCCCTCATTTGGTCAAGGCGTCTTGCTCTGATGGAAAACTCTTCAATCACCTGGAGACAGTGTGGCGCTTCAGTCCTGGCCTTCCTGGCTACCCACGTACATGCACACTCGACTTCGCTATTTCCTTTGAGTTCCGCTCACTCCTGCATTCTCAGTTGGCCACCGTTTTCTTCGATGAGGTCGTGAAGCAAATGGTATCTGCCTTCGAGCGACGGGCATCCAAGCTGTACGGCCCAGAGACGCAGATCCCACGTGAACTGATGTTCCATGAGATCCACCACACGTAGTTCATTCCACAGCTTCAGATGGAAGAGAAGAGGGGGTGTTTAGGGAACGGGAGGGTTATTGAAAACATACATATAGAGTATTATAAGGACAATCAGGAGAGCGGGAGCTGTGTGCCTGAATATCGTCAGTGCCTGGTCCAAATAAAACCGTTTCACTttttttatgctaaaaaaaaaaaaaaaaaacatgtggctGGATCTATTCACGTGGGCCTTGCCCTGCTGAGCCCTGCCCCACTACCTCCatgttaactttttttaaaacttgcTGCCCGTATGGCACCTGGAGTCGTATTTTATAATTGAGGACCTTGAGatagttttaaaaaaagctgCCAAAAACCATAATGACTTCATCAACGGCACAAAAGGCAAAGGTCATGGCTTTCTTCGAAAGGACATTACTGTgagatttgttttttataaagtgCATTATTGGAAGGTTGTTGTTTGACGCAGATTGTGACAGGTGAGTGATGTATTTATTAAGAAAGCTTTTAGGTGATCCTTTAAGATTTCAAGAAAGGGACGAGAAGCTTGAGTGCAGAAGACTGACTGTTACTGCAGCCAAATGCACATCAAGTGCTATCAGGGTATCAAGGATAAACTTCAGACTCGGGTCTGATATATTCTTGCATACCAGCACAAATAAgggcttaaaaaacaaaaactacgaGGCTGTAAAACAACATGTCCCTTTCACCAAATTGCCTTGCGCAAGTTATGTAAATTTGCGCAGTGTAGTTCTAGCTGTGGCGCTTCAGTTCACTCCTCAAATAAGAGTGAGATCTGAATATTATTTTAAGAGTCCAGATTAAAGACTGCTTTTCTGTTTTATAGGTGTGCAATATATGTCTATGTTGTTTTTAACAGTGCTTACACATCTCGATATCCACTGCTTTTAAAAGGGCCCAAACTCTGGGAACGGAGGTCGTATTGAGCCTTTTCCCAGAGCTCTCATTAGATCGTAGTGAGGTGTCCGTCGCCACAGACCTTTAAAGATTCCAATCCACACCcttcctttttgtgcttactgCCTTTTTACAGAGAGTTACATTATTTATCCTTATCTTAAAAACATGTATGCGTGCATCCTGTATTTATTTTGGTTATGGGTTAACCACGTGTACATATCTGATGTAAGACCACAGACTAAACGTTAGTGCATCGATGAgctgcaaacaaattaataatcctttttttttcttgcatatatattttttttttggggggggggggagatctctttttcttgttgtttgtttggtttaatTGAGGTGTTTAATGAGTGTGTTGTGGgtgaatatatataaatcctGCCTGCATGGTTTATAAACTATTTTTGTATATAACGCCTAA

Function

GO:

id name namespace
GO:0006744 ubiquinone biosynthetic process biological_process
GO:0045333 cellular respiration biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0048039 ubiquinone binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-263 Predicted to enable ubiquinone binding activity. Predicted to be involved in cellular respiration and ubiquinone biosynthetic process. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Orthologous to human COQ10B (coenzyme Q10B).

Ensembl:

ensembl_id ENSDART00000078576

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073295 lncRNA upstream 107241 32069957 ~ 32071133 (+) False XLOC_037245
TCONS_00075154 lncRNA upstream 263912 31913496 ~ 31914462 (+) True XLOC_037243
TCONS_00073286 lncRNA upstream 749640 31347037 ~ 31428734 (+) False XLOC_037238
TCONS_00073308 lncRNA downstream 694 32189139 ~ 32192519 (+) True XLOC_037248
TCONS_00074917 lncRNA downstream 35250 32223695 ~ 32238109 (+) True XLOC_037249
TCONS_00075155 lncRNA downstream 156438 32344883 ~ 32349025 (+) True XLOC_037252
TCONS_00074918 lncRNA downstream 348301 32536746 ~ 32537384 (+) True XLOC_037254
TCONS_00073321 lncRNA downstream 460631 32649076 ~ 32651437 (+) False XLOC_037255
TCONS_00073299 mRNA upstream 72340 32073606 ~ 32106034 (+) False XLOC_037246
TCONS_00073298 mRNA upstream 72340 32073606 ~ 32106034 (+) False XLOC_037246
TCONS_00073297 mRNA upstream 72340 32073606 ~ 32106034 (+) False XLOC_037246
TCONS_00073300 mRNA upstream 73961 32073723 ~ 32104413 (+) False XLOC_037246
TCONS_00073301 mRNA upstream 74523 32076658 ~ 32103851 (+) False XLOC_037246
TCONS_00073309 mRNA downstream 112572 32301017 ~ 32304576 (+) False XLOC_037250
TCONS_00073310 mRNA downstream 112680 32301125 ~ 32305005 (+) False XLOC_037250
TCONS_00073311 mRNA downstream 112680 32301125 ~ 32305007 (+) False XLOC_037250
TCONS_00073312 mRNA downstream 113011 32301456 ~ 32305005 (+) False XLOC_037250
TCONS_00073313 mRNA downstream 113104 32301549 ~ 32304576 (+) False XLOC_037250
TCONS_00073304 other upstream 74567 32100203 ~ 32103807 (+) True XLOC_037246
TCONS_00073294 other upstream 184941 31993311 ~ 31993433 (+) True XLOC_037244
TCONS_00073291 other upstream 605695 31566399 ~ 31572679 (+) True XLOC_037241
TCONS_00073288 other upstream 682609 31495648 ~ 31495765 (+) True XLOC_037239
TCONS_00073282 other upstream 1011972 31076056 ~ 31166402 (+) False XLOC_037235
TCONS_00073322 other downstream 460631 32649076 ~ 32652072 (+) False XLOC_037255
TCONS_00073333 other downstream 886235 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073341 other downstream 992237 33180682 ~ 33181352 (+) True XLOC_037264
TCONS_00073351 other downstream 1055753 33244198 ~ 33245755 (+) True XLOC_037270
TCONS_00073362 other downstream 1622001 33810446 ~ 33836470 (+) True XLOC_037278

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_01966898_01976924.mRNA True 1557 mRNA 0.46 6 CI01000009 1966898 ~ 1977734 (+)