RNA id: TCONS_00075176


Basic Information

Item Value
RNA id TCONS_00075176
length 1422
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id XLOC_037321
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 37475147 ~ 37492914 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ccctatttcatgtataatatgggctctttaatgtacaaaataaacctgatttaacgtccgcAACCCGGGATTGAAgtgtcttttataattgtactgacatgcagctgtgagAATAAAGACGAAAAAATCGCTGTAATTCGttaaaaacatgcactgttttaacaTATTAAACTTGTAAAGCTCATtcctgatcacatttgatgatgattgatgatcacagggAGCTCAACAGATCATTTAATCCCCGTTtctttgtgcacgtcctgtcttaTTGATACGATTATATGCGCCATTACGGAGACATAttaatacatggctgtcaatcaaGTCAGTGGGCGTGGAAACCGCACTCCTGTCACGTTACGGTCAATCTCAAAATGTGAGaggtttggatcctattttaatgtcagaaaaaaaaaattattatgtttctattactccagtatgactgtggacacactatacacagttctgttcaaacagcttccaaaagatgattttcatcataggtgccctttaagacgctaacatttttctgtaaaacttttttaaaactagaAAGATTCATTCCCATTGATTTCATCCACGTGAACCAAAACCattttctccttttgtgttccacagaagaaagccTGGTTTGAAACTTCCCATGGGTGAGCAGATAATTGCAGAATTTTGGGCGAACTACTCCTTTGAATGAACCAACGGCAAAACTGTTGAAACTAGGTTTATCGATCATCCCAAAATCCATTCAAAAAAGACACTTTTGCCGGTTCCTATTGACTTTCATTCATGCAAAACTGCAGAGCGGCTTCTTTAAAAACGAGCAGTGAATAAACTCCACACACTTGCTGGCTACATTTTAGACCAGCACTGCCAACTTCATTATTTATGCCTTGCATGTTTTGAGTGAAAAGGGCACACACACTGTATCATGTCAAAGACCAACATCCATTTTGTCTCTTAGGAGGGATTTTGTGAAGGGAAAAAGGTGCACAAGTGTTGTCAGCATTTAGTTCCAATTTCCCTCAGCCTGCCAAGCAAATCCCAACACGTCCAAATGGTAGCGTATGATAGCCGACCTGACATTGGATTGAAAAACATGACAATTTGAAAACGCTTACCTTTCACTCCCGCCAGGGTGACCTAGATTGATGCAGTCTGGGAGTAGATGGGAGAAGGACGAAACGGCTCAGGGTCAAAGCAGTTGAGGTGGTTGGGAGTGGTGGGATGGATGATGGCAGACTCCTGCGAGGGCTTGTGGAACCGCTGACAGTAAACATACACCAGGAAAGACAGCAGACCGGCACCAAGAAAACACGACACACCTGTCGCTATCAGGTGGAGCAGAGTGAACCCTGGGGGAACAAGAGAAAGCAACATTACCACAACCACTTGTCTGCAAACAACTGTAATATGTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075175 lncRNA upstream 483296 36991163 ~ 36991851 (+) True XLOC_037315
TCONS_00075174 lncRNA upstream 542615 36928055 ~ 36932532 (+) True XLOC_037312
TCONS_00075173 lncRNA upstream 544955 36928055 ~ 36930192 (+) False XLOC_037312
TCONS_00075172 lncRNA upstream 699633 36770664 ~ 36775514 (+) True XLOC_037310
TCONS_00075171 lncRNA upstream 1297726 36124753 ~ 36177421 (+) True XLOC_037308
TCONS_00075177 lncRNA downstream 14045 37506959 ~ 37508273 (+) True XLOC_037322
TCONS_00075178 lncRNA downstream 528976 38021890 ~ 38024061 (+) True XLOC_037326
TCONS_00073443 lncRNA downstream 665686 38158600 ~ 38161207 (+) False XLOC_037329
TCONS_00073452 lncRNA downstream 800005 38292919 ~ 38296930 (+) False XLOC_037333
TCONS_00073455 lncRNA downstream 814772 38307686 ~ 38308570 (+) True XLOC_037333
TCONS_00073431 mRNA upstream 22019 37366973 ~ 37453128 (+) True XLOC_037319
TCONS_00073429 mRNA upstream 135491 37320222 ~ 37339656 (+) False XLOC_037318
TCONS_00073430 mRNA upstream 140533 37329036 ~ 37334614 (+) True XLOC_037318
TCONS_00073427 mRNA upstream 177662 37152564 ~ 37297485 (+) True XLOC_037316
TCONS_00073426 mRNA upstream 178239 37141836 ~ 37296908 (+) False XLOC_037316
TCONS_00073433 mRNA downstream 261931 37754845 ~ 37840350 (+) True XLOC_037323
TCONS_00073434 mRNA downstream 357446 37850360 ~ 37862563 (+) False XLOC_037324
TCONS_00073435 mRNA downstream 357510 37850424 ~ 37860493 (+) False XLOC_037324
TCONS_00073436 mRNA downstream 357532 37850446 ~ 37856907 (+) True XLOC_037324
TCONS_00073438 mRNA downstream 550423 38043337 ~ 38065147 (+) True XLOC_037327
TCONS_00073432 other upstream 63161 37411870 ~ 37411986 (+) True XLOC_037320
TCONS_00073428 other upstream 293590 37181440 ~ 37181557 (+) True XLOC_037317
TCONS_00073423 other upstream 677313 36794719 ~ 36797834 (+) True XLOC_037311
TCONS_00073422 other upstream 677319 36794719 ~ 36797828 (+) False XLOC_037311
TCONS_00073421 other upstream 677372 36794719 ~ 36797775 (+) False XLOC_037311
TCONS_00073437 other downstream 384520 37877434 ~ 37877550 (+) True XLOC_037325
TCONS_00073445 other downstream 665884 38158798 ~ 38161649 (+) True XLOC_037329
TCONS_00073446 other downstream 667532 38160446 ~ 38160572 (+) True XLOC_037330
TCONS_00073447 other downstream 668349 38161263 ~ 38161389 (+) True XLOC_037331
TCONS_00073451 other downstream 786469 38279383 ~ 38286788 (+) True XLOC_037332

Expression Profile

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