RNA id: TCONS_00073430


Basic Information

Item Value
RNA id TCONS_00073430
length 618
RNA type mRNA
GC content 0.46
exon number 7
gene id XLOC_037318
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 37320222 ~ 37339656 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGGGTCACGCTGGACTCTTCAAGCTACTCGAATGAATATGGATTTTGGTGGAGGCTTCATAATAAAGCCTGATCAAATGCAGTGTCATTCAGtgggtgtgtgtttctgtgttgttAAGATGCTGAATGCTTTGCTGATTCTGGTGTTTATTCCAATCTTTGACATGGGCATTTATCCACTTGTAGGCCTCTGTCGGATCAAACTCACTCCGCTAAAGAAGATGGCGACGGGCATGATTCTTGCTGCACTTGCCTTCTGTGCTGCAACTGCTGTTGAAGTTTACGTCATTAAAACCGTGGTGGAGCCTCCTCCTGCCAAAGAGAGCCTTGTTCAGGTTTACAATCTTATGGATTCAGATGTCACAGTGCAGTTTCCAGCACACAATGTCTTCTCAGAGCCACTTAAACCATATGAGGAACCTTCGGGATACTCAAGTCTTCCTCTTACCGGAGAATCTCAGCTGCAGAATGTGGTTGTCAGTCACAATGGTATGAATTACCAGTGCAGACTCACGTTTACAGAGCGGATGGcttacagtctcttactgcacccTACTGCACAGCACAACGGCTCTGTATGCAATctgGTAAAAGATCACATCACCAAGTCTGAAACCG

Function

GO:

id name namespace
GO:0015833 peptide transport biological_process
GO:0015031 protein transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0001878 response to yeast biological_process
GO:0006857 oligopeptide transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0071916 dipeptide transmembrane transporter activity molecular_function
GO:0015293 symporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-030131-5866 Enables dipeptide transmembrane transporter activity. Acts upstream of or within response to yeast. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including gill; gut; kidney; nervous system; and otic vesicle. Orthologous to human SLC15A2 (solute carrier family 15 member 2).

Ensembl:

ensembl_id ENSDART00000131756

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075175 lncRNA upstream 337185 36991163 ~ 36991851 (+) True XLOC_037315
TCONS_00075174 lncRNA upstream 396504 36928055 ~ 36932532 (+) True XLOC_037312
TCONS_00075173 lncRNA upstream 398844 36928055 ~ 36930192 (+) False XLOC_037312
TCONS_00075172 lncRNA upstream 553522 36770664 ~ 36775514 (+) True XLOC_037310
TCONS_00075171 lncRNA upstream 1151615 36124753 ~ 36177421 (+) True XLOC_037308
TCONS_00075176 lncRNA downstream 140533 37475147 ~ 37492914 (+) True XLOC_037321
TCONS_00075177 lncRNA downstream 172345 37506959 ~ 37508273 (+) True XLOC_037322
TCONS_00075178 lncRNA downstream 687276 38021890 ~ 38024061 (+) True XLOC_037326
TCONS_00073443 lncRNA downstream 823986 38158600 ~ 38161207 (+) False XLOC_037329
TCONS_00073452 lncRNA downstream 958305 38292919 ~ 38296930 (+) False XLOC_037333
TCONS_00073427 mRNA upstream 31551 37152564 ~ 37297485 (+) True XLOC_037316
TCONS_00073426 mRNA upstream 32128 37141836 ~ 37296908 (+) False XLOC_037316
TCONS_00073425 mRNA upstream 354157 36967294 ~ 36974879 (+) True XLOC_037314
TCONS_00073424 mRNA upstream 372369 36946340 ~ 36956667 (+) True XLOC_037313
TCONS_00073419 mRNA upstream 634038 36356740 ~ 36694998 (+) True XLOC_037309
TCONS_00073431 mRNA downstream 32359 37366973 ~ 37453128 (+) True XLOC_037319
TCONS_00073433 mRNA downstream 420231 37754845 ~ 37840350 (+) True XLOC_037323
TCONS_00073434 mRNA downstream 515746 37850360 ~ 37862563 (+) False XLOC_037324
TCONS_00073435 mRNA downstream 515810 37850424 ~ 37860493 (+) False XLOC_037324
TCONS_00073436 mRNA downstream 515832 37850446 ~ 37856907 (+) True XLOC_037324
TCONS_00073428 other upstream 147479 37181440 ~ 37181557 (+) True XLOC_037317
TCONS_00073423 other upstream 531202 36794719 ~ 36797834 (+) True XLOC_037311
TCONS_00073422 other upstream 531208 36794719 ~ 36797828 (+) False XLOC_037311
TCONS_00073421 other upstream 531261 36794719 ~ 36797775 (+) False XLOC_037311
TCONS_00073420 other upstream 533714 36794384 ~ 36795322 (+) False XLOC_037311
TCONS_00073432 other downstream 77256 37411870 ~ 37411986 (+) True XLOC_037320
TCONS_00073437 other downstream 542820 37877434 ~ 37877550 (+) True XLOC_037325
TCONS_00073445 other downstream 824184 38158798 ~ 38161649 (+) True XLOC_037329
TCONS_00073446 other downstream 825832 38160446 ~ 38160572 (+) True XLOC_037330
TCONS_00073447 other downstream 826649 38161263 ~ 38161389 (+) True XLOC_037331

Expression Profile

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